Functional clusters
Information
- Type InterPro
- Description Nucleic acid binding NABP
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr3 | 5 | CH_acertr_1001 | 2 | 2 | 0.00070497 |
| Acer truncatum | chr12 | 5 | CH_acertr_1002 | 2 | 2 | 0.00070497 |
| Arabidopsis lyrata | scaffold_4 | 5 | CH_aly_287 | 3 | 7 | 0.000000914701 |
| Arabidopsis thaliana | Chr2 | 5 | CH_ath_265 | 3 | 11 | 0.000000812417 |
| Brassica napus | C05 | 5 | CH_bna_1228 | 2 | 2 | 0.000278425 |
| Cardamine hirsuta | Chr1 | 5 | CH_chi_755 | 2 | 3 | 0.000622048 |
| Carica papaya | supercontig_53 | 5 | CH_cpa_625 | 2 | 3 | 0.000855527 |
| Eutrema salsugineum | scaffold_10 | 5 | CH_esa_176 | 3 | 4 | 0.000000139167 |
| Physcomitrium patens | Chr03 | 5 | CH_ppa_14 | 5 | 15 | 0.0000000000399536 |
| Physcomitrium patens | Chr08 | 5 | CH_ppa_91 | 4 | 34 | 0.00000401447 |
| Phaseolus vulgaris | Chr11 | 5 | CH_pvu_612 | 2 | 2 | 0.000440836 |
| Rhododendron simsii | chr09 | 5 | CH_rsi_1034 | 2 | 2 | 0.000967961 |
| Salvia bowleyana | GWHASIU00000006 | 5 | CH_sbo_574 | 2 | 2 | 0.000136494 |
| Schrenkiella parvula | ch4-6 | 5 | CH_spa_130 | 3 | 5 | 0.000000371906 |
| Tarenaya hassleriana | NW_010965304.1 | 5 | CH_tha_55 | 4 | 5 | 0.000000000178895 |
| Utricularia gibba | unitig_899 | 5 | CH_ugi_257 | 2 | 2 | 0.000246144 |
| Acer truncatum | chr3 | 6 | CH_acertr_1001 | 2 | 2 | 0.00070497 |
| Acer truncatum | chr12 | 6 | CH_acertr_1002 | 2 | 2 | 0.00070497 |
| Arabidopsis lyrata | scaffold_4 | 6 | CH_aly_287 | 3 | 7 | 0.000000914701 |
| Arabidopsis thaliana | Chr2 | 6 | CH_ath_265 | 3 | 11 | 0.000000812417 |
| Brassica napus | C05 | 6 | CH_bna_1228 | 2 | 2 | 0.000278425 |
| Cardamine hirsuta | Chr1 | 6 | CH_chi_755 | 2 | 3 | 0.000622048 |
| Carica papaya | supercontig_53 | 6 | CH_cpa_625 | 2 | 3 | 0.000855527 |
| Eutrema salsugineum | scaffold_10 | 6 | CH_esa_176 | 3 | 4 | 0.000000139167 |
| Physcomitrium patens | Chr03 | 6 | CH_ppa_14 | 5 | 15 | 0.0000000000399536 |
| Physcomitrium patens | Chr08 | 6 | CH_ppa_91 | 4 | 34 | 0.00000401447 |
| Phaseolus vulgaris | Chr11 | 6 | CH_pvu_612 | 2 | 2 | 0.000440836 |
| Rhododendron simsii | chr09 | 6 | CH_rsi_1034 | 2 | 2 | 0.000967961 |
| Salvia bowleyana | GWHASIU00000006 | 6 | CH_sbo_574 | 2 | 2 | 0.000136494 |
| Schrenkiella parvula | ch4-6 | 6 | CH_spa_130 | 3 | 5 | 0.000000371906 |
| Tarenaya hassleriana | NW_010965304.1 | 6 | CH_tha_55 | 4 | 5 | 0.000000000178895 |
| Utricularia gibba | unitig_899 | 6 | CH_ugi_257 | 2 | 2 | 0.000246144 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |