Functional clusters
Information
- Type InterPro
- Description Alpha-amylase, C-terminal beta-sheet
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Carpinus fangiana | Cfa03 | 5 | CH_cfa_272 | 3 | 3 | 0.00000072273 |
| Durio zibethinus | NW_019167937.1 | 5 | CH_dzi_202 | 3 | 3 | 0.000000180454 |
| Nicotiana tabacum | Nitab4.5_0000287 | 5 | CH_nta_266 | 2 | 2 | 0.000329182 |
| Petunia axillaris | Peaxi162Scf00252 | 5 | CH_pax_322 | 3 | 8 | 0.0000083114 |
| Papaver somniferum | NC_039358.1 | 5 | CH_pso_680 | 3 | 7 | 0.00000439551 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_745 | 3 | 7 | 0.0000016683 |
| Rhododendron simsii | chr08 | 5 | CH_rsi_970 | 2 | 2 | 0.000645307 |
| Vitis vinifera | chr3 | 5 | CH_vvi_194 | 4 | 7 | 0.00000000161681 |
| Carpinus fangiana | Cfa03 | 6 | CH_cfa_272 | 3 | 3 | 0.00000072273 |
| Durio zibethinus | NW_019167937.1 | 6 | CH_dzi_202 | 3 | 3 | 0.000000180454 |
| Nicotiana tabacum | Nitab4.5_0000287 | 6 | CH_nta_266 | 2 | 2 | 0.000329182 |
| Petunia axillaris | Peaxi162Scf00252 | 6 | CH_pax_322 | 3 | 8 | 0.0000083114 |
| Papaver somniferum | NC_039358.1 | 6 | CH_pso_680 | 3 | 7 | 0.00000439551 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_745 | 3 | 7 | 0.0000016683 |
| Rhododendron simsii | chr08 | 6 | CH_rsi_970 | 2 | 2 | 0.000645307 |
| Vitis vinifera | chr3 | 6 | CH_vvi_194 | 4 | 7 | 0.00000000161681 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |