Functional clusters
Information
- Type InterPro
- Description Ribonuclease H-like superfamily
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aquilegia oxysepala | CHR07 | 5 | CH_aox_285 | 9 | 27 | 0.0000244692 |
| Chara braunii | BFEA01000022 | 5 | CH_cbr_149 | 30 | 78 | 0.0000411413 |
| Chara braunii | BFEA01000045 | 5 | CH_cbr_91 | 16 | 21 | 0.000000449068 |
| Citrus clementina | scaffold_2 | 5 | CH_ccl_591 | 4 | 6 | 0.000176131 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3617 | 5 | CH_cqu_872 | 6 | 8 | 0.000314711 |
| Capsella rubella | scaffold_3 | 5 | CH_cru_312 | 4 | 4 | 0.00000158702 |
| Daucus carota | DCARv2_Chr5 | 5 | CH_dca_17 | 9 | 9 | 2.31863e-18 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 5 | CH_eca_348 | 30 | 64 | 0.00000131934 |
| Erigeron canadensis | Conyza_canadensis_scaffold:7 | 5 | CH_eca_570 | 30 | 73 | 0.0000698768 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 5 | CH_eca_708 | 30 | 77 | 0.000314179 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 5 | CH_eca_798 | 30 | 79 | 0.000633751 |
| Hydrangea macrophylla | Hma1.2p1_0696F.1 | 5 | CH_hma_3 | 21 | 21 | 4.13472e-37 |
| Magnolia biondii | Chr15 | 5 | CH_mbi_1097 | 14 | 58 | 0.000440841 |
| Punica granatum | NC_045127.1 | 5 | CH_pgr_213 | 12 | 76 | 0.0000000921999 |
| Punica granatum | NC_045129.1 | 5 | CH_pgr_316 | 8 | 30 | 0.00000457011 |
| Papaver somniferum | NC_039364.1 | 5 | CH_pso_1110 | 15 | 77 | 0.000355021 |
| Populus trichocarpa | Chr16 | 5 | CH_ptr_216 | 8 | 33 | 0.00000000152185 |
| Salix brachista | GWHAAZH00000016 | 5 | CH_sbr_70 | 10 | 17 | 0.00000000000000173383 |
| Solanum pennellii | Spenn-ch01 | 5 | CH_spe_276 | 25 | 44 | 0.0000000877445 |
| Solanum pennellii | Spenn-ch06 | 5 | CH_spe_406 | 25 | 50 | 0.00000373954 |
| Solanum pennellii | Spenn-ch06 | 5 | CH_spe_601 | 30 | 77 | 0.000105715 |
| Tripterygium wilfordii | NC_052234.1 | 5 | CH_twi_541 | 10 | 80 | 0.000920155 |
| Aquilegia oxysepala | CHR07 | 6 | CH_aox_285 | 9 | 27 | 0.0000244692 |
| Chara braunii | BFEA01000022 | 6 | CH_cbr_149 | 30 | 78 | 0.0000411413 |
| Chara braunii | BFEA01000045 | 6 | CH_cbr_91 | 16 | 21 | 0.000000449068 |
| Citrus clementina | scaffold_2 | 6 | CH_ccl_591 | 4 | 6 | 0.000176131 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3617 | 6 | CH_cqu_872 | 6 | 8 | 0.000314711 |
| Capsella rubella | scaffold_3 | 6 | CH_cru_312 | 4 | 4 | 0.00000158702 |
| Daucus carota | DCARv2_Chr5 | 6 | CH_dca_17 | 9 | 9 | 2.31863e-18 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 6 | CH_eca_348 | 30 | 64 | 0.00000131934 |
| Erigeron canadensis | Conyza_canadensis_scaffold:7 | 6 | CH_eca_570 | 30 | 73 | 0.0000698768 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 6 | CH_eca_708 | 30 | 77 | 0.000314179 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 6 | CH_eca_798 | 30 | 79 | 0.000633751 |
| Hydrangea macrophylla | Hma1.2p1_0696F.1 | 6 | CH_hma_3 | 21 | 21 | 4.13472e-37 |
| Magnolia biondii | Chr15 | 6 | CH_mbi_1097 | 14 | 58 | 0.000440841 |
| Punica granatum | NC_045127.1 | 6 | CH_pgr_213 | 12 | 76 | 0.0000000921999 |
| Punica granatum | NC_045129.1 | 6 | CH_pgr_316 | 8 | 30 | 0.00000457011 |
| Papaver somniferum | NC_039364.1 | 6 | CH_pso_1110 | 15 | 77 | 0.000355021 |
| Populus trichocarpa | Chr16 | 6 | CH_ptr_216 | 8 | 33 | 0.00000000152185 |
| Salix brachista | GWHAAZH00000016 | 6 | CH_sbr_70 | 10 | 17 | 0.00000000000000173383 |
| Solanum pennellii | Spenn-ch01 | 6 | CH_spe_276 | 25 | 44 | 0.0000000877445 |
| Solanum pennellii | Spenn-ch06 | 6 | CH_spe_406 | 25 | 50 | 0.00000373954 |
| Solanum pennellii | Spenn-ch06 | 6 | CH_spe_601 | 30 | 77 | 0.000105715 |
| Tripterygium wilfordii | NC_052234.1 | 6 | CH_twi_541 | 10 | 80 | 0.000920155 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |