Functional clusters
Information
- Type InterPro
- Description Pectin lyase fold
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr4 | 5 | CH_acertr_327 | 7 | 25 | 0.000000309385 |
| Actinidia chinensis | Lachesis_group27 | 5 | CH_ach_245 | 5 | 12 | 0.0000352776 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.04 | 5 | CH_arhy_997 | 5 | 12 | 0.000160563 |
| Amborella trichopoda | AmTr_v1.0_scaffold00019 | 5 | CH_atr_345 | 4 | 5 | 0.0000432719 |
| Amborella trichopoda | AmTr_v1.0_scaffold00051 | 5 | CH_atr_437 | 4 | 6 | 0.000129373 |
| Beta vulgaris | Chr7_EL10_PGA_scaffold5 | 5 | CH_bvu_243 | 6 | 16 | 0.00000129341 |
| Beta vulgaris | Chr3_EL10_PGA_scaffold7 | 5 | CH_bvu_320 | 4 | 5 | 0.0000454654 |
| Beta vulgaris | Scaffold_0005 | 5 | CH_bvu_491 | 6 | 40 | 0.000567752 |
| Corylus avellana | 3 | 5 | CH_cav_453 | 4 | 5 | 0.000048242 |
| Coffea canephora | chr3 | 5 | CH_ccan_329 | 4 | 23 | 0.0000254569 |
| Ceratophyllum demersum | 4 | 5 | CH_cde_376 | 8 | 80 | 0.000394842 |
| Cardamine hirsuta | Chr1 | 5 | CH_chi_570 | 4 | 5 | 0.000169574 |
| Cardamine hirsuta | Chr4 | 5 | CH_chi_571 | 4 | 5 | 0.000169574 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2933 | 5 | CH_cqu_1020 | 4 | 7 | 0.000743625 |
| Davidia involucrata | GWHABJS00000009 | 5 | CH_din_80 | 8 | 9 | 0.0000000000000218364 |
| Eucalyptus grandis | Chr03 | 5 | CH_egr_899 | 4 | 4 | 0.0000041584 |
| Hydrangea macrophylla | Hma1.2p1_0108F.1 | 5 | CH_hma_259 | 4 | 7 | 0.0000606295 |
| Lupinus albus | Lalb_Chr19 | 5 | CH_lal_205 | 7 | 14 | 0.000000228303 |
| Lupinus albus | Lalb_Chr15 | 5 | CH_lal_260 | 5 | 5 | 0.00000115235 |
| Lupinus albus | Lalb_Chr18 | 5 | CH_lal_468 | 4 | 4 | 0.00014735 |
| Lupinus albus | Lalb_Chr11 | 5 | CH_lal_60 | 16 | 80 | 0.000000000000107201 |
| Lupinus albus | Lalb_Chr04 | 5 | CH_lal_72 | 8 | 9 | 0.00000000000482859 |
| Lonicera japonica | GWHAAZE00000006 | 5 | CH_lonja_842 | 5 | 11 | 0.000124239 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 5 | CH_lsa_401 | 5 | 7 | 0.000000603972 |
| Manihot esculenta | Chromosome01 | 5 | CH_mes_652 | 4 | 4 | 0.000502422 |
| Medicago truncatula | chr7 | 5 | CH_mtr_1133 | 6 | 29 | 0.000225708 |
| Nelumbo nucifera | chr3 | 5 | CH_nnu_532 | 5 | 17 | 0.000420224 |
| Populus trichocarpa | Chr02 | 5 | CH_ptr_708 | 4 | 6 | 0.000389647 |
| Quercus lobata | 9 | 5 | CH_qlo_818 | 5 | 5 | 0.000000156898 |
| Salix brachista | GWHAAZH00000002 | 5 | CH_sbr_567 | 4 | 6 | 0.000232604 |
| Simmondsia chinensis | GWHAASQ00000023 | 5 | CH_sci_183 | 5 | 7 | 0.00000177376 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_1410 | 5 | 7 | 0.00000502889 |
| Sequoiadendron giganteum | chr7 | 5 | CH_sgi_677 | 7 | 9 | 0.000000000269349 |
| Vaccinium macrocarpon | chr8_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_365 | 4 | 4 | 0.0000191172 |
| Vanilla planifolia | CM028157.1 | 5 | CH_vpl_291 | 7 | 34 | 0.0000127866 |
| Acer truncatum | chr4 | 6 | CH_acertr_327 | 7 | 25 | 0.000000309385 |
| Actinidia chinensis | Lachesis_group27 | 6 | CH_ach_245 | 5 | 12 | 0.0000352776 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.04 | 6 | CH_arhy_997 | 5 | 12 | 0.000160563 |
| Amborella trichopoda | AmTr_v1.0_scaffold00019 | 6 | CH_atr_345 | 4 | 5 | 0.0000432719 |
| Amborella trichopoda | AmTr_v1.0_scaffold00051 | 6 | CH_atr_437 | 4 | 6 | 0.000129373 |
| Beta vulgaris | Chr7_EL10_PGA_scaffold5 | 6 | CH_bvu_243 | 6 | 16 | 0.00000129341 |
| Beta vulgaris | Chr3_EL10_PGA_scaffold7 | 6 | CH_bvu_320 | 4 | 5 | 0.0000454654 |
| Beta vulgaris | Scaffold_0005 | 6 | CH_bvu_491 | 6 | 40 | 0.000567752 |
| Corylus avellana | 3 | 6 | CH_cav_453 | 4 | 5 | 0.000048242 |
| Coffea canephora | chr3 | 6 | CH_ccan_329 | 4 | 23 | 0.0000254569 |
| Ceratophyllum demersum | 4 | 6 | CH_cde_376 | 8 | 80 | 0.000394842 |
| Cardamine hirsuta | Chr1 | 6 | CH_chi_570 | 4 | 5 | 0.000169574 |
| Cardamine hirsuta | Chr4 | 6 | CH_chi_571 | 4 | 5 | 0.000169574 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2933 | 6 | CH_cqu_1020 | 4 | 7 | 0.000743625 |
| Davidia involucrata | GWHABJS00000009 | 6 | CH_din_80 | 8 | 9 | 0.0000000000000218364 |
| Eucalyptus grandis | Chr03 | 6 | CH_egr_899 | 4 | 4 | 0.0000041584 |
| Fragaria x ananassa | Fvb4-3 | 6 | CH_fan_1034 | 6 | 28 | 0.00041364 |
| Fragaria x ananassa | Fvb4-3 | 6 | CH_fan_1089 | 6 | 29 | 0.000519448 |
| Hydrangea macrophylla | Hma1.2p1_0108F.1 | 6 | CH_hma_259 | 4 | 7 | 0.0000606295 |
| Lupinus albus | Lalb_Chr19 | 6 | CH_lal_205 | 7 | 14 | 0.000000228303 |
| Lupinus albus | Lalb_Chr15 | 6 | CH_lal_260 | 5 | 5 | 0.00000115235 |
| Lupinus albus | Lalb_Chr18 | 6 | CH_lal_468 | 4 | 4 | 0.00014735 |
| Lupinus albus | Lalb_Chr11 | 6 | CH_lal_60 | 16 | 80 | 0.000000000000107201 |
| Lupinus albus | Lalb_Chr04 | 6 | CH_lal_72 | 8 | 9 | 0.00000000000482859 |
| Lonicera japonica | GWHAAZE00000006 | 6 | CH_lonja_842 | 5 | 11 | 0.000124239 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 6 | CH_lsa_401 | 5 | 7 | 0.000000603972 |
| Manihot esculenta | Chromosome01 | 6 | CH_mes_652 | 4 | 4 | 0.000502422 |
| Medicago truncatula | chr7 | 6 | CH_mtr_1133 | 6 | 29 | 0.000225708 |
| Nelumbo nucifera | chr3 | 6 | CH_nnu_532 | 5 | 17 | 0.000420224 |
| Populus trichocarpa | Chr02 | 6 | CH_ptr_708 | 4 | 6 | 0.000389647 |
| Quercus lobata | 9 | 6 | CH_qlo_818 | 5 | 5 | 0.000000156898 |
| Salix brachista | GWHAAZH00000002 | 6 | CH_sbr_567 | 4 | 6 | 0.000232604 |
| Simmondsia chinensis | GWHAASQ00000023 | 6 | CH_sci_183 | 5 | 7 | 0.00000177376 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_1410 | 5 | 7 | 0.00000502889 |
| Sequoiadendron giganteum | chr7 | 6 | CH_sgi_677 | 7 | 9 | 0.000000000269349 |
| Vaccinium macrocarpon | chr8_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_365 | 4 | 4 | 0.0000191172 |
| Vanilla planifolia | CM028157.1 | 6 | CH_vpl_291 | 7 | 34 | 0.0000127866 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |