Functional clusters
Information
- Type InterPro
- Description Acyl-CoA oxidase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica carinata | ChrB02 | 5 | CH_bca_277 | 5 | 22 | 0.000000000637859 |
| Brassica carinata | ChrC05 | 5 | CH_bca_40 | 7 | 12 | 4.61087e-19 |
| Brassica napus | A10 | 5 | CH_bna_551 | 3 | 4 | 0.000000591181 |
| Brassica oleracea | C5 | 5 | CH_bol_303 | 3 | 4 | 0.000000538426 |
| Brassica rapa | A10 | 5 | CH_bra_185 | 3 | 4 | 0.000000387026 |
| Cicer arietinum L. | Ca_LG7_v3 | 5 | CH_car_409 | 2 | 2 | 0.000778301 |
| Chara braunii | BFEA01000171 | 5 | CH_cbr_272 | 2 | 2 | 0.000215781 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3416 | 5 | CH_cqu_365 | 3 | 3 | 0.000000282885 |
| Davidia involucrata | GWHABJS00000003 | 5 | CH_din_813 | 2 | 2 | 0.000750188 |
| Lupinus albus | Lalb_Chr05 | 5 | CH_lal_281 | 3 | 4 | 0.0000019829 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 5 | CH_lsa_336 | 3 | 3 | 0.0000000792629 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_486 | 5 | 7 | 0.00000000000114134 |
| Sequoiadendron giganteum | chr10 | 5 | CH_sgi_673 | 4 | 4 | 0.000000000248 |
| Sapria himalayana | scaffold9_16683904 | 5 | CH_shi_71 | 4 | 9 | 0.000000000353289 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 5 | CH_tpr_230 | 3 | 3 | 0.000000171909 |
| Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_706 | 2 | 2 | 0.000557543 |
| Vigna mungo | CM024076.1 | 5 | CH_vmu_99 | 4 | 7 | 0.000000000991147 |
| Brassica carinata | ChrB02 | 6 | CH_bca_277 | 5 | 22 | 0.000000000637859 |
| Brassica carinata | ChrC05 | 6 | CH_bca_40 | 7 | 12 | 4.61087e-19 |
| Brassica napus | A10 | 6 | CH_bna_551 | 3 | 4 | 0.000000591181 |
| Brassica oleracea | C5 | 6 | CH_bol_303 | 3 | 4 | 0.000000538426 |
| Brassica rapa | A10 | 6 | CH_bra_185 | 3 | 4 | 0.000000387026 |
| Cicer arietinum L. | Ca_LG7_v3 | 6 | CH_car_409 | 2 | 2 | 0.000778301 |
| Chara braunii | BFEA01000171 | 6 | CH_cbr_272 | 2 | 2 | 0.000215781 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3416 | 6 | CH_cqu_365 | 3 | 3 | 0.000000282885 |
| Davidia involucrata | GWHABJS00000003 | 6 | CH_din_813 | 2 | 2 | 0.000750188 |
| Fragaria x ananassa | Fvb5-1 | 6 | CH_fan_245 | 4 | 11 | 0.00000000855606 |
| Lupinus albus | Lalb_Chr05 | 6 | CH_lal_281 | 3 | 4 | 0.0000019829 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 6 | CH_lsa_336 | 3 | 3 | 0.0000000792629 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_486 | 5 | 7 | 0.00000000000114134 |
| Sequoiadendron giganteum | chr10 | 6 | CH_sgi_673 | 4 | 4 | 0.000000000248 |
| Sapria himalayana | scaffold9_16683904 | 6 | CH_shi_71 | 4 | 9 | 0.000000000353289 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 6 | CH_tpr_230 | 3 | 3 | 0.000000171909 |
| Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_706 | 2 | 2 | 0.000557543 |
| Vigna mungo | CM024076.1 | 6 | CH_vmu_99 | 4 | 7 | 0.000000000991147 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |