Functional clusters
Information
- Type InterPro
- Description Thiamine pyrophosphate (TPP)-dependent enzyme
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-10 | 5 | CH_aar_345 | 2 | 2 | 0.000273698 |
| Acer truncatum | chr8 | 5 | CH_acertr_894 | 2 | 2 | 0.000422982 |
| Arabidopsis lyrata | scaffold_6 | 5 | CH_aly_605 | 2 | 2 | 0.000396027 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_471 | 2 | 2 | 0.000171895 |
| Amborella trichopoda | AmTr_v1.0_scaffold00065 | 5 | CH_atr_645 | 2 | 2 | 0.000794407 |
| Brassica carinata | ChrC06 | 5 | CH_bca_1170 | 3 | 15 | 0.0000261788 |
| Camellia sinensis var. sinensis | Chr13 | 5 | CH_camsi_619 | 3 | 3 | 0.000000693893 |
| Chara braunii | BFEA01000205 | 5 | CH_cbr_108 | 3 | 6 | 0.00000155168 |
| Ceratophyllum demersum | 2 | 5 | CH_cde_368 | 3 | 12 | 0.000246477 |
| Carya illinoinensis | Chr10 | 5 | CH_cil_396 | 3 | 4 | 0.000000806718 |
| Citrullus lanatus | CG_Chr04 | 5 | CH_cla_44 | 4 | 4 | 0.000000000146628 |
| Cucumis sativus L. | chr4 | 5 | CH_csa_193 | 3 | 3 | 0.000000209056 |
| Daucus carota | DCARv2_Chr4 | 5 | CH_dca_688 | 2 | 2 | 0.000637775 |
| Davidia involucrata | GWHABJS00000015 | 5 | CH_din_812 | 2 | 2 | 0.000750188 |
| Eucalyptus grandis | Chr01 | 5 | CH_egr_459 | 4 | 4 | 0.0000000000757894 |
| Gossypium hirsutum | A09 | 5 | CH_ghi_1343 | 2 | 2 | 0.000961256 |
| Gossypium hirsutum | D09 | 5 | CH_ghi_1344 | 2 | 2 | 0.000961256 |
| Gossypium raimondii | Chr06 | 5 | CH_gra_626 | 2 | 2 | 0.000536107 |
| Helianthus annuus | HanXRQChr10 | 5 | CH_han_468 | 3 | 3 | 0.000000188156 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 5 | CH_lsa_195 | 4 | 5 | 0.000000000142588 |
| Malus domestica | Chr12 | 5 | CH_mdo_759 | 3 | 9 | 0.0000152107 |
| Nelumbo nucifera | chr2 | 5 | CH_nnu_83 | 5 | 19 | 0.0000000000262635 |
| Petunia axillaris | Peaxi162Scf01132 | 5 | CH_pax_706 | 2 | 2 | 0.000703556 |
| Prunus persica | Pp06 | 5 | CH_ppe_843 | 2 | 2 | 0.000745962 |
| Pisum sativum | chr3LG5 | 5 | CH_psa_547 | 2 | 2 | 0.00015649 |
| Quercus lobata | 7 | 5 | CH_qlo_984 | 3 | 6 | 0.00000159896 |
| Striga asiatica | scaffold90 | 5 | CH_sas_26 | 4 | 10 | 0.00000000538997 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_2087 | 2 | 2 | 0.000146145 |
| Theobroma cacao | Chromosome_5 | 5 | CH_tca_176 | 4 | 5 | 0.0000000000883912 |
| Vanilla planifolia | CM028154.1 | 5 | CH_vpl_345 | 3 | 11 | 0.0000472382 |
| Aethionema arabicum | LG-10 | 6 | CH_aar_345 | 2 | 2 | 0.000273698 |
| Acer truncatum | chr8 | 6 | CH_acertr_894 | 2 | 2 | 0.000422982 |
| Arabidopsis lyrata | scaffold_6 | 6 | CH_aly_605 | 2 | 2 | 0.000396027 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_471 | 2 | 2 | 0.000171895 |
| Amborella trichopoda | AmTr_v1.0_scaffold00065 | 6 | CH_atr_645 | 2 | 2 | 0.000794407 |
| Brassica carinata | ChrC06 | 6 | CH_bca_1170 | 3 | 15 | 0.0000261788 |
| Camellia sinensis var. sinensis | Chr13 | 6 | CH_camsi_619 | 3 | 3 | 0.000000693893 |
| Chara braunii | BFEA01000205 | 6 | CH_cbr_108 | 3 | 6 | 0.00000155168 |
| Ceratophyllum demersum | 2 | 6 | CH_cde_368 | 3 | 12 | 0.000246477 |
| Carya illinoinensis | Chr10 | 6 | CH_cil_396 | 3 | 4 | 0.000000806718 |
| Citrullus lanatus | CG_Chr04 | 6 | CH_cla_44 | 4 | 4 | 0.000000000146628 |
| Cucumis melo | chr08 | 6 | CH_cme_164 | 3 | 3 | 0.000000133516 |
| Cucumis sativus L. | chr4 | 6 | CH_csa_193 | 3 | 3 | 0.000000209056 |
| Daucus carota | DCARv2_Chr4 | 6 | CH_dca_688 | 2 | 2 | 0.000637775 |
| Davidia involucrata | GWHABJS00000015 | 6 | CH_din_812 | 2 | 2 | 0.000750188 |
| Eucalyptus grandis | Chr01 | 6 | CH_egr_459 | 4 | 4 | 0.0000000000757894 |
| Gossypium hirsutum | A09 | 6 | CH_ghi_1343 | 2 | 2 | 0.000961256 |
| Gossypium hirsutum | D09 | 6 | CH_ghi_1344 | 2 | 2 | 0.000961256 |
| Gossypium raimondii | Chr06 | 6 | CH_gra_626 | 2 | 2 | 0.000536107 |
| Helianthus annuus | HanXRQChr10 | 6 | CH_han_468 | 3 | 3 | 0.000000188156 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 6 | CH_lsa_195 | 4 | 5 | 0.000000000142588 |
| Malus domestica | Chr12 | 6 | CH_mdo_759 | 3 | 9 | 0.0000152107 |
| Nelumbo nucifera | chr2 | 6 | CH_nnu_83 | 5 | 19 | 0.0000000000262635 |
| Petunia axillaris | Peaxi162Scf01132 | 6 | CH_pax_706 | 2 | 2 | 0.000703556 |
| Prunus persica | Pp06 | 6 | CH_ppe_843 | 2 | 2 | 0.000745962 |
| Pisum sativum | chr3LG5 | 6 | CH_psa_547 | 2 | 2 | 0.00015649 |
| Quercus lobata | 7 | 6 | CH_qlo_984 | 3 | 6 | 0.00000159896 |
| Striga asiatica | scaffold90 | 6 | CH_sas_26 | 4 | 10 | 0.00000000538997 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_2087 | 2 | 2 | 0.000146145 |
| Theobroma cacao | Chromosome_5 | 6 | CH_tca_176 | 4 | 5 | 0.0000000000883912 |
| Vanilla planifolia | CM028154.1 | 6 | CH_vpl_345 | 3 | 11 | 0.0000472382 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |