Functional clusters
Information
- Type InterPro
- Description EF-hand domain pair
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-6 | 5 | CH_aar_113 | 6 | 6 | 0.00000000639009 |
| Aethionema arabicum | LG-7 | 5 | CH_aar_247 | 6 | 15 | 0.0000300539 |
| Acer truncatum | chr13 | 5 | CH_acertr_2 | 18 | 19 | 2.62634e-35 |
| Camellia sinensis var. sinensis | Chr6 | 5 | CH_camsi_1151 | 4 | 5 | 0.000239993 |
| Camellia sinensis var. sinensis | Chr14 | 5 | CH_camsi_667 | 5 | 6 | 0.00000164395 |
| Capsicum annuum | PGAv.1.6.scaffold742 | 5 | CH_can_337 | 7 | 19 | 0.000000526411 |
| Carya illinoinensis | Chr15 | 5 | CH_cil_12 | 21 | 28 | 5.58454e-35 |
| Citrullus lanatus | CG_Chr08 | 5 | CH_cla_15 | 10 | 13 | 9.73786e-16 |
| Carica papaya | supercontig_49 | 5 | CH_cpa_239 | 4 | 4 | 0.0000197821 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4082 | 5 | CH_cqu_781 | 5 | 11 | 0.000155275 |
| Daucus carota | DCARv2_Chr9 | 5 | CH_dca_216 | 6 | 9 | 0.000000182411 |
| Davidia involucrata | GWHABJS00000013 | 5 | CH_din_697 | 5 | 14 | 0.000396051 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 5 | CH_eca_197 | 7 | 14 | 0.00000000818629 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 5 | CH_eca_214 | 6 | 8 | 0.0000000145394 |
| Eucalyptus grandis | Chr11 | 5 | CH_egr_1374 | 4 | 6 | 0.000613918 |
| Eucalyptus grandis | Chr11 | 5 | CH_egr_960 | 5 | 8 | 0.000013279 |
| Erythranthe guttata | scaffold_14 | 5 | CH_egut_405 | 5 | 7 | 0.00000834297 |
| Fragaria vesca | Fvb4 | 5 | CH_fve_382 | 7 | 25 | 0.000000749978 |
| Gossypium raimondii | Chr10 | 5 | CH_gra_66 | 10 | 10 | 2.15532e-17 |
| Magnolia biondii | Chr03 | 5 | CH_mbi_653 | 6 | 21 | 0.0000114454 |
| Magnolia biondii | Chr02 | 5 | CH_mbi_9 | 18 | 22 | 2.4611e-35 |
| Medicago truncatula | chr7 | 5 | CH_mtr_872 | 4 | 4 | 0.0000220228 |
| Nelumbo nucifera | chr1 | 5 | CH_nnu_76 | 7 | 7 | 0.00000000000706079 |
| Prunus persica | Pp01 | 5 | CH_ppe_408 | 5 | 6 | 0.00000137069 |
| Prunus persica | Pp01 | 5 | CH_ppe_83 | 10 | 10 | 1.68579e-18 |
| Pisum sativum | chr6LG2 | 5 | CH_psa_88 | 7 | 8 | 0.0000000000142 |
| Populus trichocarpa | Chr02 | 5 | CH_ptr_101 | 9 | 9 | 0.00000000000000192486 |
| Phaseolus vulgaris | Chr01 | 5 | CH_pvu_286 | 5 | 5 | 0.000000475255 |
| Rhododendron simsii | chr02 | 5 | CH_rsi_78 | 15 | 31 | 2.2891e-20 |
| Salix brachista | GWHAAZH00000019 | 5 | CH_sbr_68 | 14 | 40 | 0.00000000000000159107 |
| Sechium edule | LG02 | 5 | CH_sed_284 | 5 | 7 | 0.0000230314 |
| Sequoiadendron giganteum | chr7 | 5 | CH_sgi_1242 | 5 | 8 | 0.000000726074 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_1399 | 4 | 4 | 0.00000419094 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_315 | 10 | 20 | 6.14932e-16 |
| Sequoiadendron giganteum | chr10 | 5 | CH_sgi_892 | 5 | 5 | 0.0000000130673 |
| Theobroma cacao | Chromosome_8 | 5 | CH_tca_34 | 13 | 15 | 2.71776e-23 |
| Aethionema arabicum | LG-6 | 6 | CH_aar_113 | 6 | 6 | 0.00000000639009 |
| Aethionema arabicum | LG-7 | 6 | CH_aar_247 | 6 | 15 | 0.0000300539 |
| Acer truncatum | chr13 | 6 | CH_acertr_2 | 18 | 19 | 2.62634e-35 |
| Camellia sinensis var. sinensis | Chr6 | 6 | CH_camsi_1151 | 4 | 5 | 0.000239993 |
| Camellia sinensis var. sinensis | Chr14 | 6 | CH_camsi_667 | 5 | 6 | 0.00000164395 |
| Capsicum annuum | PGAv.1.6.scaffold742 | 6 | CH_can_337 | 7 | 19 | 0.000000526411 |
| Carya illinoinensis | Chr15 | 6 | CH_cil_12 | 21 | 28 | 5.58454e-35 |
| Citrullus lanatus | CG_Chr08 | 6 | CH_cla_15 | 10 | 13 | 9.73786e-16 |
| Carica papaya | supercontig_49 | 6 | CH_cpa_239 | 4 | 4 | 0.0000197821 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4082 | 6 | CH_cqu_781 | 5 | 11 | 0.000155275 |
| Daucus carota | DCARv2_Chr9 | 6 | CH_dca_216 | 6 | 9 | 0.000000182411 |
| Davidia involucrata | GWHABJS00000013 | 6 | CH_din_697 | 5 | 14 | 0.000396051 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 6 | CH_eca_197 | 7 | 14 | 0.00000000818629 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 6 | CH_eca_214 | 6 | 8 | 0.0000000145394 |
| Eucalyptus grandis | Chr11 | 6 | CH_egr_1374 | 4 | 6 | 0.000613918 |
| Eucalyptus grandis | Chr11 | 6 | CH_egr_960 | 5 | 8 | 0.000013279 |
| Erythranthe guttata | scaffold_14 | 6 | CH_egut_405 | 5 | 7 | 0.00000834297 |
| Fragaria vesca | Fvb4 | 6 | CH_fve_382 | 7 | 25 | 0.000000749978 |
| Gossypium raimondii | Chr10 | 6 | CH_gra_66 | 10 | 10 | 2.15532e-17 |
| Magnolia biondii | Chr03 | 6 | CH_mbi_653 | 6 | 21 | 0.0000114454 |
| Magnolia biondii | Chr02 | 6 | CH_mbi_9 | 18 | 22 | 2.4611e-35 |
| Medicago truncatula | chr7 | 6 | CH_mtr_872 | 4 | 4 | 0.0000220228 |
| Nelumbo nucifera | chr1 | 6 | CH_nnu_76 | 7 | 7 | 0.00000000000706079 |
| Prunus persica | Pp01 | 6 | CH_ppe_408 | 5 | 6 | 0.00000137069 |
| Prunus persica | Pp01 | 6 | CH_ppe_83 | 10 | 10 | 1.68579e-18 |
| Pisum sativum | chr6LG2 | 6 | CH_psa_88 | 7 | 8 | 0.0000000000142 |
| Populus trichocarpa | Chr02 | 6 | CH_ptr_101 | 9 | 9 | 0.00000000000000192486 |
| Phaseolus vulgaris | Chr01 | 6 | CH_pvu_286 | 5 | 5 | 0.000000475255 |
| Rhododendron simsii | chr02 | 6 | CH_rsi_78 | 15 | 31 | 2.2891e-20 |
| Salix brachista | GWHAAZH00000019 | 6 | CH_sbr_68 | 14 | 40 | 0.00000000000000159107 |
| Sechium edule | LG02 | 6 | CH_sed_284 | 5 | 7 | 0.0000230314 |
| Sequoiadendron giganteum | chr7 | 6 | CH_sgi_1242 | 5 | 8 | 0.000000726074 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_1399 | 4 | 4 | 0.00000419094 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_315 | 10 | 20 | 6.14932e-16 |
| Sequoiadendron giganteum | chr10 | 6 | CH_sgi_892 | 5 | 5 | 0.0000000130673 |
| Theobroma cacao | Chromosome_8 | 6 | CH_tca_34 | 13 | 15 | 2.71776e-23 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |