Functional clusters

Information

  • Type InterPro
  • Description Tetratricopeptide-like helical domain superfamily

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_369 5 CH_aag_106 30 76 0.000000314424
Anthoceros agrestis Sc2ySwM_344 5 CH_aag_163 9 9 0.0000259567
Anthoceros agrestis Sc2ySwM_228 5 CH_aag_240 10 12 0.0001419
Anthoceros agrestis Sc2ySwM_340 5 CH_aag_312 14 25 0.000398128
Acer truncatum chr8 5 CH_acertr_470 6 6 0.0000162472
Arabidopsis lyrata scaffold_5 5 CH_aly_566 9 27 0.000335116
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 5 CH_arhy_1126 8 18 0.000377741
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 5 CH_arhy_222 12 14 0.000000000000372804
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 5 CH_arhy_402 11 18 0.00000000462963
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 5 CH_arhy_420 8 8 0.0000000108182
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 5 CH_arhy_427 9 11 0.0000000142788
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.02 5 CH_arhy_715 9 17 0.00000550275
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 5 CH_arhy_954 14 68 0.0000928888
Brassica carinata ChrB04 5 CH_bca_1257 7 13 0.0000562862
Brassica carinata ChrC01 5 CH_bca_994 8 16 0.00000686954
Beta vulgaris Chr4_EL10_PGA_scaffold1 5 CH_bvu_237 15 59 0.00000103621
Citrus clementina scaffold_3 5 CH_ccl_489 10 27 0.0000533384
Carpinus fangiana Cfa01 5 CH_cfa_306 8 12 0.00000301629
Cardamine hirsuta Chr2 5 CH_chi_414 15 77 0.00001513
Davidia involucrata GWHABJS00000013 5 CH_din_487 11 40 0.0000704828
Fragaria vesca Fvb5 5 CH_fve_249 16 57 0.00000000888802
Fragaria vesca Fvb6 5 CH_fve_586 7 12 0.000112132
Gossypium raimondii Chr11 5 CH_gra_468 13 67 0.00013453
Helianthus annuus HanXRQChr06 5 CH_han_601 6 6 0.00000285046
Lactuca sativa Lsat_1_v8_lg_7 5 CH_lsa_236 9 11 0.00000000163558
Magnolia biondii Chr04 5 CH_mbi_306 9 11 0.0000000104597
Magnolia biondii Chr05 5 CH_mbi_672 10 26 0.0000185745
Malus domestica Chr08 5 CH_mdo_1202 5 5 0.000349344
Malus domestica Chr17 5 CH_mdo_904 9 24 0.0000942084
Oryza sativa ssp. japonica chr10 5 CH_osa_330 13 61 0.00000175324
Quercus lobata 3 5 CH_qlo_1153 13 52 0.0000236887
Rosa chinensis RcHm_v2.0_Chr1 5 CH_rch_1058 12 50 0.000080379
Rosa chinensis RcHm_v2.0_Chr1 5 CH_rch_1365 10 37 0.000534149
Rosa chinensis RcHm_v2.0_Chr4 5 CH_rch_247 22 80 0.000000000000552934
Rosa chinensis RcHm_v2.0_Chr0c11 5 CH_rch_572 11 24 0.000000121653
Rosa chinensis RcHm_v2.0_Chr7 5 CH_rch_61 25 44 8.74404e-25
Striga asiatica scaffold10 5 CH_sas_112 6 7 0.0000183463
Striga asiatica scaffold205 5 CH_sas_78 6 6 0.00000266855
Salvia bowleyana GWHASIU00000007 5 CH_sbo_543 9 31 0.000133895
Salix brachista GWHAAZH00000008 5 CH_sbr_267 7 7 0.000000267821
Sequoiadendron giganteum chr8 5 CH_sgi_1314 9 15 0.00000145993
Sequoiadendron giganteum chr8 5 CH_sgi_1494 6 6 0.0000168817
Sequoiadendron giganteum chr4 5 CH_sgi_1495 6 6 0.0000168817
Sequoiadendron giganteum chr9 5 CH_sgi_2513 5 5 0.000620423
Sequoiadendron giganteum chr6 5 CH_sgi_556 22 80 0.00000000000812409
Sequoiadendron giganteum chr2 5 CH_sgi_890 8 8 0.0000000124664
Sapria himalayana scaffold5_19632047 5 CH_shi_359 5 7 0.0000655429
Selaginella moellendorffii scaffold_47 5 CH_smo_199 9 11 0.0000668654
Solanum tuberosum ST4.03ch06 5 CH_stu_363 13 52 0.000000215906
Anthoceros agrestis Sc2ySwM_369 6 CH_aag_106 30 76 0.000000314424
Anthoceros agrestis Sc2ySwM_344 6 CH_aag_163 9 9 0.0000259567
Anthoceros agrestis Sc2ySwM_228 6 CH_aag_240 10 12 0.0001419
Anthoceros agrestis Sc2ySwM_340 6 CH_aag_312 14 25 0.000398128
Acer truncatum chr8 6 CH_acertr_470 6 6 0.0000162472
Arabidopsis lyrata scaffold_5 6 CH_aly_566 9 27 0.000335116
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 6 CH_arhy_1126 8 18 0.000377741
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 6 CH_arhy_222 12 14 0.000000000000372804
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 6 CH_arhy_402 11 18 0.00000000462963
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 6 CH_arhy_420 8 8 0.0000000108182
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 6 CH_arhy_427 9 11 0.0000000142788
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.02 6 CH_arhy_715 9 17 0.00000550275
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 6 CH_arhy_954 14 68 0.0000928888
Brassica carinata ChrB04 6 CH_bca_1257 7 13 0.0000562862
Brassica carinata ChrC01 6 CH_bca_994 8 16 0.00000686954
Beta vulgaris Chr4_EL10_PGA_scaffold1 6 CH_bvu_237 15 59 0.00000103621
Citrus clementina scaffold_3 6 CH_ccl_489 10 27 0.0000533384
Carpinus fangiana Cfa01 6 CH_cfa_306 8 12 0.00000301629
Cardamine hirsuta Chr2 6 CH_chi_414 15 77 0.00001513
Davidia involucrata GWHABJS00000013 6 CH_din_487 11 40 0.0000704828
Fragaria x ananassa Fvb4-4 6 CH_fan_1054 7 12 0.000477356
Fragaria vesca Fvb5 6 CH_fve_249 16 57 0.00000000888802
Fragaria vesca Fvb6 6 CH_fve_586 7 12 0.000112132
Gossypium raimondii Chr11 6 CH_gra_468 13 67 0.00013453
Helianthus annuus HanXRQChr06 6 CH_han_601 6 6 0.00000285046
Lactuca sativa Lsat_1_v8_lg_7 6 CH_lsa_236 9 11 0.00000000163558
Magnolia biondii Chr04 6 CH_mbi_306 9 11 0.0000000104597
Magnolia biondii Chr05 6 CH_mbi_672 10 26 0.0000185745
Malus domestica Chr08 6 CH_mdo_1202 5 5 0.000349344
Malus domestica Chr17 6 CH_mdo_904 9 24 0.0000942084
Oryza sativa ssp. japonica chr10 6 CH_osa_330 13 61 0.00000175324
Quercus lobata 3 6 CH_qlo_1153 13 52 0.0000236887
Rosa chinensis RcHm_v2.0_Chr1 6 CH_rch_1058 12 50 0.000080379
Rosa chinensis RcHm_v2.0_Chr1 6 CH_rch_1365 10 37 0.000534149
Rosa chinensis RcHm_v2.0_Chr4 6 CH_rch_247 22 80 0.000000000000552934
Rosa chinensis RcHm_v2.0_Chr0c11 6 CH_rch_572 11 24 0.000000121653
Rosa chinensis RcHm_v2.0_Chr7 6 CH_rch_61 25 44 8.74404e-25
Striga asiatica scaffold10 6 CH_sas_112 6 7 0.0000183463
Striga asiatica scaffold205 6 CH_sas_78 6 6 0.00000266855
Salvia bowleyana GWHASIU00000007 6 CH_sbo_543 9 31 0.000133895
Salix brachista GWHAAZH00000008 6 CH_sbr_267 7 7 0.000000267821
Sequoiadendron giganteum chr8 6 CH_sgi_1314 9 15 0.00000145993
Sequoiadendron giganteum chr8 6 CH_sgi_1494 6 6 0.0000168817
Sequoiadendron giganteum chr4 6 CH_sgi_1495 6 6 0.0000168817
Sequoiadendron giganteum chr9 6 CH_sgi_2513 5 5 0.000620423
Sequoiadendron giganteum chr6 6 CH_sgi_556 22 80 0.00000000000812409
Sequoiadendron giganteum chr2 6 CH_sgi_890 8 8 0.0000000124664
Sapria himalayana scaffold5_19632047 6 CH_shi_359 5 7 0.0000655429
Selaginella moellendorffii scaffold_47 6 CH_smo_199 9 11 0.0000668654
Solanum tuberosum ST4.03ch06 6 CH_stu_363 13 52 0.000000215906

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001