Functional clusters

Information

  • Type InterPro
  • Description Leucine-rich repeat 3

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_2 5 CH_aly_219 6 17 0.0000000808962
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 5 CH_arhy_357 8 70 0.000000000727279
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 5 CH_arhy_479 4 4 0.0000000828228
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 5 CH_arhy_921 3 3 0.0000801845
Arabidopsis thaliana Chr1 5 CH_ath_203 6 28 0.0000000651025
Arabidopsis thaliana Chr4 5 CH_ath_482 4 17 0.00018391
Brassica carinata ChrC03 5 CH_bca_1217 4 7 0.0000385513
Brassica carinata ChrB02 5 CH_bca_1924 3 3 0.000601795
Brassica napus A08 5 CH_bna_1011 6 48 0.0000611883
Brassica napus A09 5 CH_bna_1104 5 25 0.000145118
Brassica napus A04 5 CH_bna_1251 4 10 0.000308351
Brassica napus A09 5 CH_bna_1456 4 12 0.000724605
Brassica napus C09 5 CH_bna_184 7 14 0.0000000000341221
Brassica napus A02 5 CH_bna_980 4 7 0.0000516287
Brassica oleracea C9 5 CH_bol_129 6 11 0.000000000584508
Camellia sinensis var. sinensis Chr7 5 CH_camsi_56 10 47 2.10743e-20
Camellia sinensis var. sinensis Chr7 5 CH_camsi_858 3 4 0.0000194222
Cardamine hirsuta Chr7 5 CH_chi_425 4 5 0.0000227153
Capsella rubella scaffold_8 5 CH_cru_117 7 11 0.0000000000372155
Capsella rubella scaffold_15 5 CH_cru_252 5 7 0.000000232708
Glycine max Gm06 5 CH_gma_155 7 48 0.0000000000573928
Lotus japonicus chr3 5 CH_lja_58 6 12 0.00000000000289213
Malus domestica Chr10 5 CH_mdo_1285 4 25 0.000509297
Malus domestica Chr05 5 CH_mdo_233 8 66 0.000000000124483
Malus domestica Chr07 5 CH_mdo_271 7 42 0.000000000712698
Populus trichocarpa Chr19 5 CH_ptr_80 8 25 3.19947e-17
Phaseolus vulgaris Chr10 5 CH_pvu_98 8 61 0.00000000000132074
Quercus lobata 3 5 CH_qlo_263 8 11 5.386e-16
Quercus lobata 8 5 CH_qlo_631 5 6 0.00000000415748
Rosa chinensis RcHm_v2.0_Chr1 5 CH_rch_263 9 79 0.00000000000240588
Salix brachista GWHAAZH00000019 5 CH_sbr_296 3 4 0.000000833781
Schrenkiella parvula ch2-1 5 CH_spa_206 4 15 0.0000405709
Tripterygium wilfordii NC_052236.1 5 CH_twi_403 2 2 0.000167252
Arabidopsis lyrata scaffold_2 6 CH_aly_219 6 17 0.0000000808962
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 6 CH_arhy_357 8 70 0.000000000727279
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 6 CH_arhy_479 4 4 0.0000000828228
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 6 CH_arhy_921 3 3 0.0000801845
Arabidopsis thaliana Chr1 6 CH_ath_203 6 28 0.0000000651025
Arabidopsis thaliana Chr4 6 CH_ath_482 4 17 0.00018391
Brassica carinata ChrC03 6 CH_bca_1217 4 7 0.0000385513
Brassica carinata ChrB02 6 CH_bca_1924 3 3 0.000601795
Brassica napus A08 6 CH_bna_1011 6 48 0.0000611883
Brassica napus A09 6 CH_bna_1104 5 25 0.000145118
Brassica napus A04 6 CH_bna_1251 4 10 0.000308351
Brassica napus A09 6 CH_bna_1456 4 12 0.000724605
Brassica napus C09 6 CH_bna_184 7 14 0.0000000000341221
Brassica napus A02 6 CH_bna_980 4 7 0.0000516287
Brassica oleracea C9 6 CH_bol_129 6 11 0.000000000584508
Camellia sinensis var. sinensis Chr7 6 CH_camsi_56 10 47 2.10743e-20
Camellia sinensis var. sinensis Chr7 6 CH_camsi_858 3 4 0.0000194222
Cardamine hirsuta Chr7 6 CH_chi_425 4 5 0.0000227153
Capsella rubella scaffold_8 6 CH_cru_117 7 11 0.0000000000372155
Capsella rubella scaffold_15 6 CH_cru_252 5 7 0.000000232708
Glycine max Gm06 6 CH_gma_155 7 48 0.0000000000573928
Lotus japonicus chr3 6 CH_lja_58 6 12 0.00000000000289213
Malus domestica Chr10 6 CH_mdo_1285 4 25 0.000509297
Malus domestica Chr05 6 CH_mdo_233 8 66 0.000000000124483
Malus domestica Chr07 6 CH_mdo_271 7 42 0.000000000712698
Populus trichocarpa Chr19 6 CH_ptr_80 8 25 3.19947e-17
Phaseolus vulgaris Chr10 6 CH_pvu_98 8 61 0.00000000000132074
Quercus lobata 3 6 CH_qlo_263 8 11 5.386e-16
Quercus lobata 8 6 CH_qlo_631 5 6 0.00000000415748
Rosa chinensis RcHm_v2.0_Chr1 6 CH_rch_263 9 79 0.00000000000240588
Salix brachista GWHAAZH00000019 6 CH_sbr_296 3 4 0.000000833781
Schrenkiella parvula ch2-1 6 CH_spa_206 4 15 0.0000405709
Tripterygium wilfordii NC_052236.1 6 CH_twi_403 2 2 0.000167252

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001