Functional clusters

Information

  • Type InterPro
  • Description Stress up-regulated Nod 19

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_228 5 CH_aag_74 3 3 0.00000000966212
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.02 5 CH_arhy_129 8 18 3.11595e-18
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 5 CH_arhy_75 10 25 2.87575e-23
Amborella trichopoda AmTr_v1.0_scaffold00016 5 CH_atr_73 4 4 0.00000000000150419
Brassica carinata ChrC01 5 CH_bca_173 4 5 0.00000000000512818
Brassica napus C03 5 CH_bna_486 3 6 0.000000206704
Brassica oleracea C3 5 CH_bol_290 3 8 0.000000358932
Camellia sinensis var. sinensis Chr2 5 CH_camsi_937 2 2 0.0000458547
Cannabis sativa NC_044371.1 5 CH_cansat_465 2 2 0.000196993
Capsicum annuum PGAv.1.6.scaffold416 5 CH_can_168 4 4 0.000000000118407
Coffea canephora chr4 5 CH_ccan_258 2 3 0.00000425891
Citrus clementina scaffold_4 5 CH_ccl_531 2 2 0.0000820311
Carya illinoinensis Chr01 5 CH_cil_186 4 7 0.0000000000250037
Corchorus olitorius AWUE01023871.1 5 CH_col_194 2 3 0.000876168
Capsella rubella scaffold_8 5 CH_cru_454 2 2 0.0000731154
Cucumis sativus L. chr1 5 CH_csa_180 3 3 0.000000104528
Cucumis sativus L. chr7 5 CH_csa_496 2 2 0.000834759
Daucus carota DCARv2_Chr3 5 CH_dca_603 2 2 0.000382665
Davidia involucrata GWHABJS00000006 5 CH_din_556 2 2 0.000150038
Durio zibethinus NW_019167827.1 5 CH_dzi_517 2 3 0.000417124
Erigeron canadensis Conyza_canadensis_scaffold:2 5 CH_eca_202 3 4 0.0000000120811
Eutrema salsugineum scaffold_6 5 CH_esa_394 2 3 0.000228441
Fragaria vesca Fvb5 5 CH_fve_546 2 2 0.0000589102
Gossypium hirsutum A12 5 CH_ghi_1120 2 2 0.000400523
Glycine max Gm05 5 CH_gma_129 5 6 0.00000000000753782
Glycine max Gm04 5 CH_gma_228 4 4 0.00000000287908
Glycine max Gm04 5 CH_gma_229 4 4 0.00000000287908
Glycine max Gm01 5 CH_gma_473 3 3 0.00000632091
Gossypium raimondii Chr08 5 CH_gra_511 2 2 0.000160832
Helianthus annuus HanXRQChr09 5 CH_han_273 5 57 0.000000000419446
Lotus japonicus chr3 5 CH_lja_60 6 24 0.00000000000521302
Lactuca sativa Lsat_1_v8_lg_4 5 CH_lsa_257 3 3 0.00000000396314
Magnolia biondii Chr07 5 CH_mbi_49 6 7 4.25639e-20
Malus domestica Chr00 5 CH_mdo_1309 2 2 0.000568817
Malus domestica Chr14 5 CH_mdo_475 3 4 0.000000172554
Marchantia polymorpha scaffold_2 5 CH_mpo_72 3 3 0.000000182973
Medicago truncatula chr2 5 CH_mtr_763 3 3 0.0000033678
Medicago truncatula chr4 5 CH_mtr_92 7 7 4.40629e-20
Punica granatum NC_045129.1 5 CH_pgr_418 2 2 0.0000750356
Populus trichocarpa Chr15 5 CH_ptr_152 4 4 0.00000000000869034
Phaseolus vulgaris Chr10 5 CH_pvu_186 6 53 0.00000000545456
Phaseolus vulgaris Chr10 5 CH_pvu_402 3 5 0.0000368172
Quercus lobata 10 5 CH_qlo_257 5 6 3.19772e-16
Rosa chinensis RcHm_v2.0_Chr7 5 CH_rch_1324 2 2 0.000398653
Rosa chinensis RcHm_v2.0_Chr1 5 CH_rch_1325 2 2 0.000398653
Rhododendron simsii chr08 5 CH_rsi_319 3 3 0.00000000624652
Salix brachista GWHAAZH00000015 5 CH_sbr_158 5 25 0.000000000351117
Simmondsia chinensis GWHAASQ00000020 5 CH_sci_361 2 3 0.000255417
Sechium edule LG08 5 CH_sed_461 2 2 0.000428052
Sequoiadendron giganteum chr4 5 CH_sgi_190 6 6 6.17459e-21
Selaginella moellendorffii scaffold_0 5 CH_smo_32 4 4 0.0000000000122119
Solanum tuberosum ST4.03ch12 5 CH_stu_836 2 3 0.000461188
Trifolium pratense Tp57577_TGAC_v2_LG3 5 CH_tpr_313 3 3 0.00000312875
Trifolium pratense Tp57577_TGAC_v2_LG7 5 CH_tpr_314 3 3 0.00000312875
Tripterygium wilfordii NC_052250.1 5 CH_twi_184 3 4 0.000000186481
Tripterygium wilfordii NC_052239.1 5 CH_twi_500 2 2 0.000557507
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_151 3 3 0.0000000129529
Vigna mungo CM024078.1 5 CH_vmu_176 5 69 0.000000183501
Anthoceros agrestis Sc2ySwM_228 6 CH_aag_74 3 3 0.00000000966212
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.02 6 CH_arhy_129 8 18 3.11595e-18
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 6 CH_arhy_75 10 25 2.87575e-23
Amborella trichopoda AmTr_v1.0_scaffold00016 6 CH_atr_73 4 4 0.00000000000150419
Brassica carinata ChrC01 6 CH_bca_173 4 5 0.00000000000512818
Brassica napus C03 6 CH_bna_486 3 6 0.000000206704
Brassica oleracea C3 6 CH_bol_290 3 8 0.000000358932
Camellia sinensis var. sinensis Chr2 6 CH_camsi_937 2 2 0.0000458547
Cannabis sativa NC_044371.1 6 CH_cansat_465 2 2 0.000196993
Capsicum annuum PGAv.1.6.scaffold416 6 CH_can_168 4 4 0.000000000118407
Coffea canephora chr4 6 CH_ccan_258 2 3 0.00000425891
Citrus clementina scaffold_4 6 CH_ccl_531 2 2 0.0000820311
Carya illinoinensis Chr01 6 CH_cil_186 4 7 0.0000000000250037
Cucumis melo chr02 6 CH_cme_50 5 6 0.00000000000000534832
Corchorus olitorius AWUE01023871.1 6 CH_col_194 2 3 0.000876168
Capsella rubella scaffold_8 6 CH_cru_454 2 2 0.0000731154
Cucumis sativus L. chr1 6 CH_csa_180 3 3 0.000000104528
Cucumis sativus L. chr7 6 CH_csa_496 2 2 0.000834759
Daucus carota DCARv2_Chr3 6 CH_dca_603 2 2 0.000382665
Davidia involucrata GWHABJS00000006 6 CH_din_556 2 2 0.000150038
Durio zibethinus NW_019167827.1 6 CH_dzi_517 2 3 0.000417124
Erigeron canadensis Conyza_canadensis_scaffold:2 6 CH_eca_202 3 4 0.0000000120811
Eutrema salsugineum scaffold_6 6 CH_esa_394 2 3 0.000228441
Fragaria x ananassa Fvb5-4 6 CH_fan_962 2 2 0.000277554
Fragaria vesca Fvb5 6 CH_fve_546 2 2 0.0000589102
Gossypium hirsutum A12 6 CH_ghi_1120 2 2 0.000400523
Glycine max Gm05 6 CH_gma_129 5 6 0.00000000000753782
Glycine max Gm04 6 CH_gma_228 4 4 0.00000000287908
Glycine max Gm04 6 CH_gma_229 4 4 0.00000000287908
Glycine max Gm01 6 CH_gma_473 3 3 0.00000632091
Gossypium raimondii Chr08 6 CH_gra_511 2 2 0.000160832
Helianthus annuus HanXRQChr09 6 CH_han_273 5 57 0.000000000419446
Lotus japonicus chr3 6 CH_lja_60 6 24 0.00000000000521302
Lactuca sativa Lsat_1_v8_lg_4 6 CH_lsa_257 3 3 0.00000000396314
Magnolia biondii Chr07 6 CH_mbi_49 6 7 4.25639e-20
Malus domestica Chr00 6 CH_mdo_1309 2 2 0.000568817
Malus domestica Chr14 6 CH_mdo_475 3 4 0.000000172554
Marchantia polymorpha scaffold_2 6 CH_mpo_72 3 3 0.000000182973
Medicago truncatula chr2 6 CH_mtr_763 3 3 0.0000033678
Medicago truncatula chr4 6 CH_mtr_92 7 7 4.40629e-20
Punica granatum NC_045129.1 6 CH_pgr_418 2 2 0.0000750356
Populus trichocarpa Chr15 6 CH_ptr_152 4 4 0.00000000000869034
Phaseolus vulgaris Chr10 6 CH_pvu_186 6 53 0.00000000545456
Phaseolus vulgaris Chr10 6 CH_pvu_402 3 5 0.0000368172
Quercus lobata 10 6 CH_qlo_257 5 6 3.19772e-16
Rosa chinensis RcHm_v2.0_Chr7 6 CH_rch_1324 2 2 0.000398653
Rosa chinensis RcHm_v2.0_Chr1 6 CH_rch_1325 2 2 0.000398653
Rhododendron simsii chr08 6 CH_rsi_319 3 3 0.00000000624652
Salix brachista GWHAAZH00000015 6 CH_sbr_158 5 25 0.000000000351117
Simmondsia chinensis GWHAASQ00000020 6 CH_sci_361 2 3 0.000255417
Sechium edule LG08 6 CH_sed_461 2 2 0.000428052
Sequoiadendron giganteum chr4 6 CH_sgi_190 6 6 6.17459e-21
Selaginella moellendorffii scaffold_0 6 CH_smo_32 4 4 0.0000000000122119
Solanum tuberosum ST4.03ch12 6 CH_stu_836 2 3 0.000461188
Trifolium pratense Tp57577_TGAC_v2_LG3 6 CH_tpr_313 3 3 0.00000312875
Trifolium pratense Tp57577_TGAC_v2_LG7 6 CH_tpr_314 3 3 0.00000312875
Tripterygium wilfordii NC_052250.1 6 CH_twi_184 3 4 0.000000186481
Tripterygium wilfordii NC_052239.1 6 CH_twi_500 2 2 0.000557507
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_151 3 3 0.0000000129529
Vigna mungo CM024078.1 6 CH_vmu_176 5 69 0.000000183501

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001