Functional clusters

Information

  • Type InterPro
  • Description WD40-like Beta Propeller

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_1 5 CH_aly_531 2 2 0.000198013
Arabidopsis thaliana Chr1 5 CH_ath_470 2 2 0.000171895
Amborella trichopoda AmTr_v1.0_scaffold00045 5 CH_atr_497 2 2 0.000238322
Brassica carinata ChrC05 5 CH_bca_1797 2 2 0.000448905
Brassica carinata ChrB07 5 CH_bca_444 3 3 0.0000000239902
Brassica napus A06 5 CH_bna_1226 2 2 0.000278425
Brassica napus C05 5 CH_bna_1227 2 2 0.000278425
Brassica oleracea C5 5 CH_bol_608 2 2 0.0000980584
Brassica rapa A06 5 CH_bra_400 2 2 0.000128794
Beta vulgaris Chr4_EL10_PGA_scaffold1 5 CH_bvu_59 6 19 0.00000000000019917
Camellia sinensis var. sinensis Chr5 5 CH_camsi_722 3 6 0.00000353139
Cannabis sativa NC_044376.1 5 CH_cansat_145 5 33 0.00000000415398
Cannabis sativa NC_044374.1 5 CH_cansat_334 3 7 0.0000190019
Cicer arietinum L. Ca_LG4_v3 5 CH_car_355 2 2 0.000466981
Cardamine hirsuta Chr1 5 CH_chi_613 2 2 0.000207361
Carya illinoinensis Chr07 5 CH_cil_814 2 2 0.000619828
Corchorus olitorius AWUE01018165.1 5 CH_col_155 2 2 0.000292099
Daucus carota DCARv2_Chr1 5 CH_dca_383 3 9 0.0000430073
Eucalyptus grandis Chr08 5 CH_egr_1280 2 2 0.000351165
Glycine max Gm10 5 CH_gma_810 2 2 0.000379557
Lotus japonicus chr2 5 CH_lja_470 2 2 0.000214523
Manihot esculenta Chromosome08 5 CH_mes_235 4 6 0.00000000338009
Medicago truncatula chr1 5 CH_mtr_991 3 26 0.000065759
Salvia bowleyana GWHASIU00000007 5 CH_sbo_708 2 2 0.00045498
Salvia bowleyana GWHASIU00000002 5 CH_sbo_709 2 2 0.00045498
Sequoiadendron giganteum chr3 5 CH_sgi_1054 3 3 0.0000000711967
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_705 2 2 0.000557543
Vigna mungo CM024071.1 5 CH_vmu_528 2 2 0.000387685
Arabidopsis lyrata scaffold_1 6 CH_aly_531 2 2 0.000198013
Arabidopsis thaliana Chr1 6 CH_ath_470 2 2 0.000171895
Amborella trichopoda AmTr_v1.0_scaffold00045 6 CH_atr_497 2 2 0.000238322
Brassica carinata ChrC05 6 CH_bca_1797 2 2 0.000448905
Brassica carinata ChrB07 6 CH_bca_444 3 3 0.0000000239902
Brassica napus A06 6 CH_bna_1226 2 2 0.000278425
Brassica napus C05 6 CH_bna_1227 2 2 0.000278425
Brassica oleracea C5 6 CH_bol_608 2 2 0.0000980584
Brassica rapa A06 6 CH_bra_400 2 2 0.000128794
Beta vulgaris Chr4_EL10_PGA_scaffold1 6 CH_bvu_59 6 19 0.00000000000019917
Camellia sinensis var. sinensis Chr5 6 CH_camsi_722 3 6 0.00000353139
Cannabis sativa NC_044376.1 6 CH_cansat_145 5 33 0.00000000415398
Cannabis sativa NC_044374.1 6 CH_cansat_334 3 7 0.0000190019
Cicer arietinum L. Ca_LG4_v3 6 CH_car_355 2 2 0.000466981
Cardamine hirsuta Chr1 6 CH_chi_613 2 2 0.000207361
Carya illinoinensis Chr07 6 CH_cil_814 2 2 0.000619828
Corchorus olitorius AWUE01018165.1 6 CH_col_155 2 2 0.000292099
Daucus carota DCARv2_Chr1 6 CH_dca_383 3 9 0.0000430073
Eucalyptus grandis Chr08 6 CH_egr_1280 2 2 0.000351165
Glycine max Gm10 6 CH_gma_810 2 2 0.000379557
Lotus japonicus chr2 6 CH_lja_470 2 2 0.000214523
Manihot esculenta Chromosome08 6 CH_mes_235 4 6 0.00000000338009
Medicago truncatula chr1 6 CH_mtr_991 3 26 0.000065759
Salvia bowleyana GWHASIU00000007 6 CH_sbo_708 2 2 0.00045498
Salvia bowleyana GWHASIU00000002 6 CH_sbo_709 2 2 0.00045498
Sequoiadendron giganteum chr3 6 CH_sgi_1054 3 3 0.0000000711967
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_705 2 2 0.000557543
Vigna mungo CM024071.1 6 CH_vmu_528 2 2 0.000387685

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001