Functional clusters
Information
- Type InterPro
- Description Myc-type, basic helix-loop-helix (bHLH) domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr3 | 5 | CH_acertr_91 | 7 | 8 | 0.00000000000406522 |
| Avicennia marina | ScioBoG_3895_HRSCAF_3912 | 5 | CH_ama_145 | 5 | 12 | 0.000213729 |
| Aquilegia oxysepala | CHR07 | 5 | CH_aox_184 | 6 | 17 | 0.000000681356 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 5 | CH_arhy_837 | 4 | 4 | 0.0000219749 |
| Arabidopsis thaliana | Chr2 | 5 | CH_ath_575 | 3 | 3 | 0.000504834 |
| Beta vulgaris | Chr6_EL10_PGA_scaffold0 | 5 | CH_bvu_305 | 4 | 5 | 0.0000247828 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1214 | 5 | CH_cqu_652 | 4 | 5 | 0.0000534241 |
| Daucus carota | DCARv2_Chr4 | 5 | CH_dca_354 | 4 | 4 | 0.0000166362 |
| Daucus carota | DCARv2_Chr5 | 5 | CH_dca_360 | 5 | 10 | 0.0000194011 |
| Daucus carota | DCARv2_Chr3 | 5 | CH_dca_394 | 5 | 12 | 0.0000604957 |
| Glycine max | Gm07 | 5 | CH_gma_587 | 4 | 4 | 0.0000651861 |
| Glycine max | Gm08 | 5 | CH_gma_588 | 4 | 4 | 0.0000651861 |
| Lotus japonicus | chr2 | 5 | CH_lja_114 | 6 | 7 | 0.00000000492253 |
| Lonicera japonica | GWHAAZE00000004 | 5 | CH_lonja_407 | 5 | 6 | 0.0000000353057 |
| Magnolia biondii | Chr19 | 5 | CH_mbi_1235 | 3 | 3 | 0.0007848 |
| Magnolia biondii | Chr02 | 5 | CH_mbi_790 | 6 | 40 | 0.0000490194 |
| Magnolia biondii | Chr18 | 5 | CH_mbi_847 | 4 | 8 | 0.000142872 |
| Marchantia polymorpha | scaffold_31 | 5 | CH_mpo_96 | 4 | 5 | 0.00000300559 |
| Medicago truncatula | chr5 | 5 | CH_mtr_1007 | 4 | 6 | 0.0000816481 |
| Medicago truncatula | chr2 | 5 | CH_mtr_384 | 7 | 15 | 0.00000000111198 |
| Medicago truncatula | chr4 | 5 | CH_mtr_792 | 4 | 4 | 0.00000547145 |
| Nicotiana tabacum | Nitab4.5_0000093 | 5 | CH_nta_234 | 4 | 8 | 0.000163545 |
| Nicotiana tabacum | Nitab4.5_0000396 | 5 | CH_nta_239 | 4 | 9 | 0.000293602 |
| Petunia axillaris | Peaxi162Scf00216 | 5 | CH_pax_211 | 5 | 6 | 0.000000200734 |
| Petunia axillaris | Peaxi162Scf00818 | 5 | CH_pax_376 | 4 | 5 | 0.0000413497 |
| Pisum sativum | chr4LG4 | 5 | CH_psa_233 | 5 | 6 | 0.000000102788 |
| Populus trichocarpa | Chr18 | 5 | CH_ptr_502 | 4 | 4 | 0.0000261943 |
| Populus trichocarpa | Chr06 | 5 | CH_ptr_584 | 4 | 5 | 0.000130426 |
| Phaseolus vulgaris | Chr10 | 5 | CH_pvu_261 | 5 | 5 | 0.000000203222 |
| Salvia bowleyana | GWHASIU00000008 | 5 | CH_sbo_474 | 6 | 35 | 0.0000454157 |
| Salix brachista | GWHAAZH00000018 | 5 | CH_sbr_248 | 5 | 5 | 0.00000010014 |
| Sequoiadendron giganteum | chr7 | 5 | CH_sgi_1556 | 4 | 5 | 0.0000359885 |
| Sequoiadendron giganteum | chr10 | 5 | CH_sgi_954 | 6 | 10 | 0.0000000190709 |
| Vigna mungo | CM024078.1 | 5 | CH_vmu_271 | 4 | 4 | 0.0000151124 |
| Zea mays | 4 | 5 | CH_zma_359 | 4 | 5 | 0.0000845113 |
| Acer truncatum | chr3 | 6 | CH_acertr_91 | 7 | 8 | 0.00000000000406522 |
| Avicennia marina | ScioBoG_3895_HRSCAF_3912 | 6 | CH_ama_145 | 5 | 12 | 0.000213729 |
| Aquilegia oxysepala | CHR07 | 6 | CH_aox_184 | 6 | 17 | 0.000000681356 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 6 | CH_arhy_837 | 4 | 4 | 0.0000219749 |
| Arabidopsis thaliana | Chr2 | 6 | CH_ath_575 | 3 | 3 | 0.000504834 |
| Beta vulgaris | Chr6_EL10_PGA_scaffold0 | 6 | CH_bvu_305 | 4 | 5 | 0.0000247828 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1214 | 6 | CH_cqu_652 | 4 | 5 | 0.0000534241 |
| Daucus carota | DCARv2_Chr4 | 6 | CH_dca_354 | 4 | 4 | 0.0000166362 |
| Daucus carota | DCARv2_Chr5 | 6 | CH_dca_360 | 5 | 10 | 0.0000194011 |
| Daucus carota | DCARv2_Chr3 | 6 | CH_dca_394 | 5 | 12 | 0.0000604957 |
| Glycine max | Gm07 | 6 | CH_gma_587 | 4 | 4 | 0.0000651861 |
| Glycine max | Gm08 | 6 | CH_gma_588 | 4 | 4 | 0.0000651861 |
| Lotus japonicus | chr2 | 6 | CH_lja_114 | 6 | 7 | 0.00000000492253 |
| Lonicera japonica | GWHAAZE00000004 | 6 | CH_lonja_407 | 5 | 6 | 0.0000000353057 |
| Magnolia biondii | Chr19 | 6 | CH_mbi_1235 | 3 | 3 | 0.0007848 |
| Magnolia biondii | Chr02 | 6 | CH_mbi_790 | 6 | 40 | 0.0000490194 |
| Magnolia biondii | Chr18 | 6 | CH_mbi_847 | 4 | 8 | 0.000142872 |
| Marchantia polymorpha | scaffold_31 | 6 | CH_mpo_96 | 4 | 5 | 0.00000300559 |
| Medicago truncatula | chr5 | 6 | CH_mtr_1007 | 4 | 6 | 0.0000816481 |
| Medicago truncatula | chr2 | 6 | CH_mtr_384 | 7 | 15 | 0.00000000111198 |
| Medicago truncatula | chr4 | 6 | CH_mtr_792 | 4 | 4 | 0.00000547145 |
| Nicotiana tabacum | Nitab4.5_0000093 | 6 | CH_nta_234 | 4 | 8 | 0.000163545 |
| Nicotiana tabacum | Nitab4.5_0000396 | 6 | CH_nta_239 | 4 | 9 | 0.000293602 |
| Petunia axillaris | Peaxi162Scf00216 | 6 | CH_pax_211 | 5 | 6 | 0.000000200734 |
| Petunia axillaris | Peaxi162Scf00818 | 6 | CH_pax_376 | 4 | 5 | 0.0000413497 |
| Pisum sativum | chr4LG4 | 6 | CH_psa_233 | 5 | 6 | 0.000000102788 |
| Populus trichocarpa | Chr18 | 6 | CH_ptr_502 | 4 | 4 | 0.0000261943 |
| Populus trichocarpa | Chr06 | 6 | CH_ptr_584 | 4 | 5 | 0.000130426 |
| Phaseolus vulgaris | Chr10 | 6 | CH_pvu_261 | 5 | 5 | 0.000000203222 |
| Salvia bowleyana | GWHASIU00000008 | 6 | CH_sbo_474 | 6 | 35 | 0.0000454157 |
| Salix brachista | GWHAAZH00000018 | 6 | CH_sbr_248 | 5 | 5 | 0.00000010014 |
| Sequoiadendron giganteum | chr7 | 6 | CH_sgi_1556 | 4 | 5 | 0.0000359885 |
| Sequoiadendron giganteum | chr10 | 6 | CH_sgi_954 | 6 | 10 | 0.0000000190709 |
| Vigna mungo | CM024078.1 | 6 | CH_vmu_271 | 4 | 4 | 0.0000151124 |
| Zea mays | 4 | 6 | CH_zma_359 | 4 | 5 | 0.0000845113 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |