Functional clusters
Information
- Type InterPro
- Description Metalloenzyme, LuxS/M16 peptidase-like
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr5 | 5 | CH_acertr_368 | 3 | 3 | 0.00000123008 |
| Avicennia marina | ScioBoG_102839_HRSCAF_103093 | 5 | CH_ama_26 | 4 | 5 | 0.00000000962196 |
| Brassica napus | C06 | 5 | CH_bna_1172 | 3 | 6 | 0.000215029 |
| Brassica oleracea | C6 | 5 | CH_bol_646 | 3 | 7 | 0.000163863 |
| Camellia sinensis var. sinensis | Chr5 | 5 | CH_camsi_1132 | 3 | 9 | 0.000179875 |
| Fragaria vesca | Fvb3 | 5 | CH_fve_104 | 6 | 13 | 0.000000000000338396 |
| Helianthus annuus | HanXRQChr08 | 5 | CH_han_648 | 3 | 4 | 0.00000501644 |
| Lupinus albus | Lalb_Chr05 | 5 | CH_lal_338 | 3 | 4 | 0.00000925243 |
| Magnolia biondii | Chr14 | 5 | CH_mbi_795 | 3 | 6 | 0.0000562893 |
| Malus domestica | Chr05 | 5 | CH_mdo_133 | 6 | 11 | 0.000000000000144152 |
| Marchantia polymorpha | scaffold_138 | 5 | CH_mpo_111 | 3 | 4 | 0.0000120715 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_39 | 13 | 30 | 1.57749e-29 |
| Rhododendron simsii | chr02 | 5 | CH_rsi_711 | 3 | 8 | 0.0000768609 |
| Sequoiadendron giganteum | chr6 | 5 | CH_sgi_1177 | 4 | 8 | 0.000000306606 |
| Sequoiadendron giganteum | chr5 | 5 | CH_sgi_1448 | 3 | 3 | 0.00000818762 |
| Sequoiadendron giganteum | chr6 | 5 | CH_sgi_323 | 6 | 6 | 0.00000000000000109352 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_843 | 4 | 4 | 0.00000000438768 |
| Solanum tuberosum | ST4.03ch04 | 5 | CH_stu_444 | 3 | 4 | 0.00000259942 |
| Vaccinium macrocarpon | chr2_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_45 | 6 | 6 | 4.68355e-16 |
| Acer truncatum | chr5 | 6 | CH_acertr_368 | 3 | 3 | 0.00000123008 |
| Avicennia marina | ScioBoG_102839_HRSCAF_103093 | 6 | CH_ama_26 | 4 | 5 | 0.00000000962196 |
| Brassica napus | C06 | 6 | CH_bna_1172 | 3 | 6 | 0.000215029 |
| Brassica oleracea | C6 | 6 | CH_bol_646 | 3 | 7 | 0.000163863 |
| Camellia sinensis var. sinensis | Chr5 | 6 | CH_camsi_1132 | 3 | 9 | 0.000179875 |
| Fragaria vesca | Fvb3 | 6 | CH_fve_104 | 6 | 13 | 0.000000000000338396 |
| Helianthus annuus | HanXRQChr08 | 6 | CH_han_648 | 3 | 4 | 0.00000501644 |
| Lupinus albus | Lalb_Chr05 | 6 | CH_lal_338 | 3 | 4 | 0.00000925243 |
| Magnolia biondii | Chr14 | 6 | CH_mbi_795 | 3 | 6 | 0.0000562893 |
| Malus domestica | Chr05 | 6 | CH_mdo_133 | 6 | 11 | 0.000000000000144152 |
| Marchantia polymorpha | scaffold_138 | 6 | CH_mpo_111 | 3 | 4 | 0.0000120715 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_39 | 13 | 30 | 1.57749e-29 |
| Rhododendron simsii | chr02 | 6 | CH_rsi_711 | 3 | 8 | 0.0000768609 |
| Sequoiadendron giganteum | chr6 | 6 | CH_sgi_1177 | 4 | 8 | 0.000000306606 |
| Sequoiadendron giganteum | chr5 | 6 | CH_sgi_1448 | 3 | 3 | 0.00000818762 |
| Sequoiadendron giganteum | chr6 | 6 | CH_sgi_323 | 6 | 6 | 0.00000000000000109352 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_843 | 4 | 4 | 0.00000000438768 |
| Solanum tuberosum | ST4.03ch04 | 6 | CH_stu_444 | 3 | 4 | 0.00000259942 |
| Vaccinium macrocarpon | chr2_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_45 | 6 | 6 | 4.68355e-16 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |