Functional clusters
Information
- Type InterPro
- Description RmlC-like cupin domain superfamily
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-5 | 5 | CH_aar_364 | 3 | 3 | 0.000327561 |
| Ceratophyllum demersum | 1 | 5 | CH_cde_85 | 5 | 8 | 0.000000182525 |
| Eucalyptus grandis | Chr07 | 5 | CH_egr_127 | 11 | 11 | 8.96313e-23 |
| Glycine max | Gm20 | 5 | CH_gma_681 | 6 | 45 | 0.000153557 |
| Glycine max | Gm10 | 5 | CH_gma_892 | 5 | 27 | 0.000596068 |
| Magnolia biondii | Chr07 | 5 | CH_mbi_2 | 18 | 19 | 2.37377e-42 |
| Magnolia biondii | Chr01 | 5 | CH_mbi_544 | 5 | 11 | 0.00000166754 |
| Manihot esculenta | Chromosome01 | 5 | CH_mes_514 | 4 | 6 | 0.0000656217 |
| Papaver somniferum | NC_039359.1 | 5 | CH_pso_1244 | 3 | 3 | 0.000752429 |
| Populus trichocarpa | Chr13 | 5 | CH_ptr_72 | 9 | 9 | 8.20606e-19 |
| Rhododendron simsii | chr09 | 5 | CH_rsi_741 | 4 | 8 | 0.000156244 |
| Sequoiadendron giganteum | chr5 | 5 | CH_sgi_150 | 11 | 11 | 3.7527e-23 |
| Selaginella moellendorffii | scaffold_0 | 5 | CH_smo_73 | 5 | 5 | 0.0000000312987 |
| Solanum pennellii | Spenn-ch01 | 5 | CH_spe_172 | 5 | 5 | 0.000000000963019 |
| Vigna mungo | CM024071.1 | 5 | CH_vmu_278 | 5 | 22 | 0.0000199548 |
| Vitis vinifera | chr12 | 5 | CH_vvi_97 | 9 | 16 | 0.00000000000000523623 |
| Aethionema arabicum | LG-5 | 6 | CH_aar_364 | 3 | 3 | 0.000327561 |
| Ceratophyllum demersum | 1 | 6 | CH_cde_85 | 5 | 8 | 0.000000182525 |
| Eucalyptus grandis | Chr07 | 6 | CH_egr_127 | 11 | 11 | 8.96313e-23 |
| Glycine max | Gm20 | 6 | CH_gma_681 | 6 | 45 | 0.000153557 |
| Glycine max | Gm10 | 6 | CH_gma_892 | 5 | 27 | 0.000596068 |
| Magnolia biondii | Chr07 | 6 | CH_mbi_2 | 18 | 19 | 2.37377e-42 |
| Magnolia biondii | Chr01 | 6 | CH_mbi_544 | 5 | 11 | 0.00000166754 |
| Manihot esculenta | Chromosome01 | 6 | CH_mes_514 | 4 | 6 | 0.0000656217 |
| Papaver somniferum | NC_039359.1 | 6 | CH_pso_1244 | 3 | 3 | 0.000752429 |
| Populus trichocarpa | Chr13 | 6 | CH_ptr_72 | 9 | 9 | 8.20606e-19 |
| Rhododendron simsii | chr09 | 6 | CH_rsi_741 | 4 | 8 | 0.000156244 |
| Sequoiadendron giganteum | chr5 | 6 | CH_sgi_150 | 11 | 11 | 3.7527e-23 |
| Selaginella moellendorffii | scaffold_0 | 6 | CH_smo_73 | 5 | 5 | 0.0000000312987 |
| Solanum pennellii | Spenn-ch01 | 6 | CH_spe_172 | 5 | 5 | 0.000000000963019 |
| Vigna mungo | CM024071.1 | 6 | CH_vmu_278 | 5 | 22 | 0.0000199548 |
| Vitis vinifera | chr12 | 6 | CH_vvi_97 | 9 | 16 | 0.00000000000000523623 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |