Functional clusters
Information
- Type InterPro
- Description Pectin lyase fold/virulence factor
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group18 | 5 | CH_ach_492 | 4 | 7 | 0.000416422 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.12 | 5 | CH_arhy_897 | 5 | 10 | 0.00005466 |
| Brassica oleracea | C1 | 5 | CH_bol_643 | 4 | 4 | 0.000156994 |
| Capsicum annuum | PGAv.1.6.scaffold1280 | 5 | CH_can_626 | 4 | 6 | 0.000174113 |
| Chara braunii | BFEA01000397 | 5 | CH_cbr_45 | 7 | 10 | 0.000000000525727 |
| Carya illinoinensis | Chr07 | 5 | CH_cil_839 | 4 | 7 | 0.000666363 |
| Fragaria vesca | Fvb7 | 5 | CH_fve_561 | 4 | 5 | 0.0000653216 |
| Malus domestica | Chr11 | 5 | CH_mdo_1286 | 4 | 7 | 0.000509533 |
| Malus domestica | Chr16 | 5 | CH_mdo_882 | 4 | 5 | 0.0000732658 |
| Solanum lycopersicum | SL4.0ch01 | 5 | CH_sly_289 | 5 | 5 | 0.0000000685278 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 5 | CH_tpr_449 | 4 | 4 | 0.0000514369 |
| Vitis vinifera | chr12 | 5 | CH_vvi_77 | 10 | 13 | 6.72371e-17 |
| Actinidia chinensis | Lachesis_group18 | 6 | CH_ach_492 | 4 | 7 | 0.000416422 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.12 | 6 | CH_arhy_897 | 5 | 10 | 0.00005466 |
| Brassica oleracea | C1 | 6 | CH_bol_643 | 4 | 4 | 0.000156994 |
| Capsicum annuum | PGAv.1.6.scaffold1280 | 6 | CH_can_626 | 4 | 6 | 0.000174113 |
| Chara braunii | BFEA01000397 | 6 | CH_cbr_45 | 7 | 10 | 0.000000000525727 |
| Carya illinoinensis | Chr07 | 6 | CH_cil_839 | 4 | 7 | 0.000666363 |
| Fragaria vesca | Fvb7 | 6 | CH_fve_561 | 4 | 5 | 0.0000653216 |
| Malus domestica | Chr11 | 6 | CH_mdo_1286 | 4 | 7 | 0.000509533 |
| Malus domestica | Chr16 | 6 | CH_mdo_882 | 4 | 5 | 0.0000732658 |
| Solanum lycopersicum | SL4.0ch01 | 6 | CH_sly_289 | 5 | 5 | 0.0000000685278 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 6 | CH_tpr_449 | 4 | 4 | 0.0000514369 |
| Vitis vinifera | chr12 | 6 | CH_vvi_77 | 10 | 13 | 6.72371e-17 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |