Functional clusters
Information
- Type InterPro
- Description Galactose oxidase/kelch, beta-propeller
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_15 | 5 | CH_amhyb_147 | 4 | 7 | 0.00000196509 |
| Brassica carinata | ChrC09 | 5 | CH_bca_1058 | 4 | 5 | 0.0000108683 |
| Brassica carinata | ChrB08 | 5 | CH_bca_2174 | 3 | 3 | 0.000998634 |
| Brassica napus | A03 | 5 | CH_bna_793 | 4 | 5 | 0.00000926304 |
| Camellia sinensis var. sinensis | Chr9 | 5 | CH_camsi_1508 | 3 | 7 | 0.000928942 |
| Capsella rubella | scaffold_6 | 5 | CH_cru_339 | 4 | 4 | 0.00000423621 |
| Erigeron canadensis | Conyza_canadensis_scaffold:7 | 5 | CH_eca_436 | 5 | 23 | 0.0000089556 |
| Erythranthe guttata | scaffold_6 | 5 | CH_egut_145 | 6 | 6 | 0.0000000000161326 |
| Eutrema salsugineum | scaffold_13 | 5 | CH_esa_494 | 3 | 3 | 0.000714672 |
| Fragaria vesca | Fvb7 | 5 | CH_fve_372 | 5 | 9 | 0.000000496068 |
| Fragaria vesca | Fvb1 | 5 | CH_fve_800 | 3 | 3 | 0.000611573 |
| Lupinus albus | Lalb_Chr13 | 5 | CH_lal_442 | 3 | 3 | 0.0000627194 |
| Lotus japonicus | chr2 | 5 | CH_lja_229 | 4 | 5 | 0.000000500764 |
| Lotus japonicus | chr5 | 5 | CH_lja_421 | 3 | 3 | 0.0000757827 |
| Marchantia polymorpha | scaffold_41 | 5 | CH_mpo_114 | 4 | 5 | 0.0000128063 |
| Medicago truncatula | chr4 | 5 | CH_mtr_216 | 9 | 24 | 0.000000000000152639 |
| Medicago truncatula | chr4 | 5 | CH_mtr_394 | 6 | 10 | 0.0000000020048 |
| Medicago truncatula | chr2 | 5 | CH_mtr_687 | 5 | 10 | 0.00000101637 |
| Papaver somniferum | NC_039368.1 | 5 | CH_pso_1268 | 5 | 25 | 0.000813293 |
| Papaver somniferum | NC_039366.1 | 5 | CH_pso_251 | 8 | 21 | 0.0000000000681031 |
| Papaver somniferum | NC_039368.1 | 5 | CH_pso_280 | 6 | 7 | 0.000000000312958 |
| Papaver somniferum | NC_039367.1 | 5 | CH_pso_463 | 5 | 6 | 0.0000000960227 |
| Phaseolus vulgaris | Chr04 | 5 | CH_pvu_397 | 4 | 12 | 0.0000306095 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_1370 | 3 | 4 | 0.000592445 |
| Striga asiatica | scaffold181 | 5 | CH_sas_68 | 4 | 5 | 0.00000115883 |
| Salvia bowleyana | GWHASIU00000008 | 5 | CH_sbo_616 | 3 | 3 | 0.000201289 |
| Vaccinium macrocarpon | chr1_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_338 | 4 | 10 | 0.0000088249 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_15 | 6 | CH_amhyb_147 | 4 | 7 | 0.00000196509 |
| Brassica carinata | ChrC09 | 6 | CH_bca_1058 | 4 | 5 | 0.0000108683 |
| Brassica carinata | ChrB08 | 6 | CH_bca_2174 | 3 | 3 | 0.000998634 |
| Brassica napus | A03 | 6 | CH_bna_793 | 4 | 5 | 0.00000926304 |
| Camellia sinensis var. sinensis | Chr9 | 6 | CH_camsi_1508 | 3 | 7 | 0.000928942 |
| Cucumis melo | chr04 | 6 | CH_cme_240 | 3 | 3 | 0.0000076104 |
| Capsella rubella | scaffold_6 | 6 | CH_cru_339 | 4 | 4 | 0.00000423621 |
| Erigeron canadensis | Conyza_canadensis_scaffold:7 | 6 | CH_eca_436 | 5 | 23 | 0.0000089556 |
| Erythranthe guttata | scaffold_6 | 6 | CH_egut_145 | 6 | 6 | 0.0000000000161326 |
| Eutrema salsugineum | scaffold_13 | 6 | CH_esa_494 | 3 | 3 | 0.000714672 |
| Fragaria vesca | Fvb7 | 6 | CH_fve_372 | 5 | 9 | 0.000000496068 |
| Fragaria vesca | Fvb1 | 6 | CH_fve_800 | 3 | 3 | 0.000611573 |
| Lupinus albus | Lalb_Chr13 | 6 | CH_lal_442 | 3 | 3 | 0.0000627194 |
| Lotus japonicus | chr2 | 6 | CH_lja_229 | 4 | 5 | 0.000000500764 |
| Lotus japonicus | chr5 | 6 | CH_lja_421 | 3 | 3 | 0.0000757827 |
| Marchantia polymorpha | scaffold_41 | 6 | CH_mpo_114 | 4 | 5 | 0.0000128063 |
| Medicago truncatula | chr4 | 6 | CH_mtr_216 | 9 | 24 | 0.000000000000152639 |
| Medicago truncatula | chr4 | 6 | CH_mtr_394 | 6 | 10 | 0.0000000020048 |
| Medicago truncatula | chr2 | 6 | CH_mtr_687 | 5 | 10 | 0.00000101637 |
| Papaver somniferum | NC_039368.1 | 6 | CH_pso_1268 | 5 | 25 | 0.000813293 |
| Papaver somniferum | NC_039366.1 | 6 | CH_pso_251 | 8 | 21 | 0.0000000000681031 |
| Papaver somniferum | NC_039368.1 | 6 | CH_pso_280 | 6 | 7 | 0.000000000312958 |
| Papaver somniferum | NC_039367.1 | 6 | CH_pso_463 | 5 | 6 | 0.0000000960227 |
| Phaseolus vulgaris | Chr04 | 6 | CH_pvu_397 | 4 | 12 | 0.0000306095 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_1370 | 3 | 4 | 0.000592445 |
| Striga asiatica | scaffold181 | 6 | CH_sas_68 | 4 | 5 | 0.00000115883 |
| Salvia bowleyana | GWHASIU00000008 | 6 | CH_sbo_616 | 3 | 3 | 0.000201289 |
| Vaccinium macrocarpon | chr1_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_338 | 4 | 10 | 0.0000088249 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |