Functional clusters
Information
- Type InterPro
- Description Six-bladed beta-propeller, TolB-like
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_5 | 5 | CH_aly_230 | 4 | 5 | 0.000000155002 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 5 | CH_arhy_847 | 3 | 3 | 0.0000247706 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.03 | 5 | CH_arhy_848 | 3 | 3 | 0.0000247706 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.06 | 5 | CH_arhy_849 | 3 | 3 | 0.0000247706 |
| Brassica napus | C06 | 5 | CH_bna_508 | 5 | 16 | 0.000000337584 |
| Brassica rapa | A04 | 5 | CH_bra_97 | 5 | 8 | 0.00000000173952 |
| Corylus avellana | 2 | 5 | CH_cav_287 | 4 | 7 | 0.000000828733 |
| Chara braunii | BFEA01000332 | 5 | CH_cbr_281 | 5 | 20 | 0.000224431 |
| Chara braunii | BFEA01000082 | 5 | CH_cbr_84 | 6 | 15 | 0.000000251774 |
| Citrus clementina | scaffold_3 | 5 | CH_ccl_689 | 3 | 4 | 0.000462944 |
| Cardamine hirsuta | Chr5 | 5 | CH_chi_59 | 7 | 7 | 7.17267e-17 |
| Davidia involucrata | GWHABJS00000008 | 5 | CH_din_621 | 3 | 5 | 0.000224246 |
| Durio zibethinus | NW_019167993.1 | 5 | CH_dzi_336 | 3 | 3 | 0.0000175814 |
| Lonicera japonica | GWHAAZE00000001 | 5 | CH_lonja_667 | 5 | 27 | 0.0000217577 |
| Magnolia biondii | Chr05 | 5 | CH_mbi_682 | 3 | 3 | 0.0000211719 |
| Manihot esculenta | Chromosome05 | 5 | CH_mes_318 | 4 | 5 | 0.000000421105 |
| Medicago truncatula | chr8 | 5 | CH_mtr_375 | 5 | 7 | 0.000000000854624 |
| Medicago truncatula | chr2 | 5 | CH_mtr_961 | 3 | 3 | 0.0000466529 |
| Papaver somniferum | NW_020618825.1 | 5 | CH_pso_101 | 8 | 20 | 1.6512e-16 |
| Papaver somniferum | NC_039367.1 | 5 | CH_pso_909 | 3 | 4 | 0.0000843817 |
| Populus trichocarpa | Chr16 | 5 | CH_ptr_480 | 3 | 3 | 0.0000146584 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 5 | CH_rch_1032 | 3 | 4 | 0.0000570336 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 5 | CH_rch_1448 | 3 | 8 | 0.000796927 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 5 | CH_rch_575 | 4 | 6 | 0.000000132094 |
| Salvia bowleyana | GWHASIU00000002 | 5 | CH_sbo_278 | 4 | 6 | 0.0000000535744 |
| Simmondsia chinensis | GWHAASQ00000018 | 5 | CH_sci_261 | 3 | 4 | 0.0000669426 |
| Sequoiadendron giganteum | chr5 | 5 | CH_sgi_1545 | 3 | 3 | 0.0000325333 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_1546 | 3 | 3 | 0.0000325333 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_1547 | 3 | 3 | 0.0000325333 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_1548 | 3 | 3 | 0.0000325333 |
| Selaginella moellendorffii | scaffold_134 | 5 | CH_smo_361 | 4 | 32 | 0.000912737 |
| Selaginella moellendorffii | scaffold_9 | 5 | CH_smo_86 | 4 | 5 | 0.000000129661 |
| Solanum tuberosum | ST4.03ch03 | 5 | CH_stu_300 | 4 | 4 | 0.0000000165216 |
| Solanum tuberosum | ST4.03ch07 | 5 | CH_stu_644 | 3 | 4 | 0.0000859177 |
| Theobroma cacao | Chromosome_2 | 5 | CH_tca_265 | 4 | 4 | 0.0000000241331 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 5 | CH_tpr_277 | 4 | 9 | 0.00000144757 |
| Vaccinium macrocarpon | chr3_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_409 | 3 | 4 | 0.0000916899 |
| Zea mays | 8 | 5 | CH_zma_24 | 8 | 10 | 2.78846e-18 |
| Arabidopsis lyrata | scaffold_5 | 6 | CH_aly_230 | 4 | 5 | 0.000000155002 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 6 | CH_arhy_847 | 3 | 3 | 0.0000247706 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.03 | 6 | CH_arhy_848 | 3 | 3 | 0.0000247706 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.06 | 6 | CH_arhy_849 | 3 | 3 | 0.0000247706 |
| Brassica napus | C06 | 6 | CH_bna_508 | 5 | 16 | 0.000000337584 |
| Brassica rapa | A04 | 6 | CH_bra_97 | 5 | 8 | 0.00000000173952 |
| Corylus avellana | 2 | 6 | CH_cav_287 | 4 | 7 | 0.000000828733 |
| Chara braunii | BFEA01000332 | 6 | CH_cbr_281 | 5 | 20 | 0.000224431 |
| Chara braunii | BFEA01000082 | 6 | CH_cbr_84 | 6 | 15 | 0.000000251774 |
| Citrus clementina | scaffold_3 | 6 | CH_ccl_689 | 3 | 4 | 0.000462944 |
| Cardamine hirsuta | Chr5 | 6 | CH_chi_59 | 7 | 7 | 7.17267e-17 |
| Davidia involucrata | GWHABJS00000008 | 6 | CH_din_621 | 3 | 5 | 0.000224246 |
| Durio zibethinus | NW_019167993.1 | 6 | CH_dzi_336 | 3 | 3 | 0.0000175814 |
| Fragaria x ananassa | Fvb4-3 | 6 | CH_fan_796 | 3 | 3 | 0.0000733804 |
| Lonicera japonica | GWHAAZE00000001 | 6 | CH_lonja_667 | 5 | 27 | 0.0000217577 |
| Magnolia biondii | Chr05 | 6 | CH_mbi_682 | 3 | 3 | 0.0000211719 |
| Manihot esculenta | Chromosome05 | 6 | CH_mes_318 | 4 | 5 | 0.000000421105 |
| Medicago truncatula | chr8 | 6 | CH_mtr_375 | 5 | 7 | 0.000000000854624 |
| Medicago truncatula | chr2 | 6 | CH_mtr_961 | 3 | 3 | 0.0000466529 |
| Papaver somniferum | NW_020618825.1 | 6 | CH_pso_101 | 8 | 20 | 1.6512e-16 |
| Papaver somniferum | NC_039367.1 | 6 | CH_pso_909 | 3 | 4 | 0.0000843817 |
| Populus trichocarpa | Chr16 | 6 | CH_ptr_480 | 3 | 3 | 0.0000146584 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 6 | CH_rch_1032 | 3 | 4 | 0.0000570336 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 6 | CH_rch_1448 | 3 | 8 | 0.000796927 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 6 | CH_rch_575 | 4 | 6 | 0.000000132094 |
| Salvia bowleyana | GWHASIU00000002 | 6 | CH_sbo_278 | 4 | 6 | 0.0000000535744 |
| Simmondsia chinensis | GWHAASQ00000018 | 6 | CH_sci_261 | 3 | 4 | 0.0000669426 |
| Sequoiadendron giganteum | chr5 | 6 | CH_sgi_1545 | 3 | 3 | 0.0000325333 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_1546 | 3 | 3 | 0.0000325333 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_1547 | 3 | 3 | 0.0000325333 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_1548 | 3 | 3 | 0.0000325333 |
| Selaginella moellendorffii | scaffold_134 | 6 | CH_smo_361 | 4 | 32 | 0.000912737 |
| Selaginella moellendorffii | scaffold_9 | 6 | CH_smo_86 | 4 | 5 | 0.000000129661 |
| Solanum tuberosum | ST4.03ch03 | 6 | CH_stu_300 | 4 | 4 | 0.0000000165216 |
| Solanum tuberosum | ST4.03ch07 | 6 | CH_stu_644 | 3 | 4 | 0.0000859177 |
| Theobroma cacao | Chromosome_2 | 6 | CH_tca_265 | 4 | 4 | 0.0000000241331 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 6 | CH_tpr_277 | 4 | 9 | 0.00000144757 |
| Vaccinium macrocarpon | chr3_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_409 | 3 | 4 | 0.0000916899 |
| Zea mays | 8 | 6 | CH_zma_24 | 8 | 10 | 2.78846e-18 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |