Functional clusters

Information

  • Type InterPro
  • Description Six-bladed beta-propeller, TolB-like

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_5 5 CH_aly_230 4 5 0.000000155002
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 5 CH_arhy_847 3 3 0.0000247706
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 5 CH_arhy_848 3 3 0.0000247706
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 5 CH_arhy_849 3 3 0.0000247706
Brassica napus C06 5 CH_bna_508 5 16 0.000000337584
Brassica rapa A04 5 CH_bra_97 5 8 0.00000000173952
Corylus avellana 2 5 CH_cav_287 4 7 0.000000828733
Chara braunii BFEA01000332 5 CH_cbr_281 5 20 0.000224431
Chara braunii BFEA01000082 5 CH_cbr_84 6 15 0.000000251774
Citrus clementina scaffold_3 5 CH_ccl_689 3 4 0.000462944
Cardamine hirsuta Chr5 5 CH_chi_59 7 7 7.17267e-17
Davidia involucrata GWHABJS00000008 5 CH_din_621 3 5 0.000224246
Durio zibethinus NW_019167993.1 5 CH_dzi_336 3 3 0.0000175814
Lonicera japonica GWHAAZE00000001 5 CH_lonja_667 5 27 0.0000217577
Magnolia biondii Chr05 5 CH_mbi_682 3 3 0.0000211719
Manihot esculenta Chromosome05 5 CH_mes_318 4 5 0.000000421105
Medicago truncatula chr8 5 CH_mtr_375 5 7 0.000000000854624
Medicago truncatula chr2 5 CH_mtr_961 3 3 0.0000466529
Papaver somniferum NW_020618825.1 5 CH_pso_101 8 20 1.6512e-16
Papaver somniferum NC_039367.1 5 CH_pso_909 3 4 0.0000843817
Populus trichocarpa Chr16 5 CH_ptr_480 3 3 0.0000146584
Rosa chinensis RcHm_v2.0_Chr3 5 CH_rch_1032 3 4 0.0000570336
Rosa chinensis RcHm_v2.0_Chr1 5 CH_rch_1448 3 8 0.000796927
Rosa chinensis RcHm_v2.0_Chr7 5 CH_rch_575 4 6 0.000000132094
Salvia bowleyana GWHASIU00000002 5 CH_sbo_278 4 6 0.0000000535744
Simmondsia chinensis GWHAASQ00000018 5 CH_sci_261 3 4 0.0000669426
Sequoiadendron giganteum chr5 5 CH_sgi_1545 3 3 0.0000325333
Sequoiadendron giganteum chr3 5 CH_sgi_1546 3 3 0.0000325333
Sequoiadendron giganteum chr1 5 CH_sgi_1547 3 3 0.0000325333
Sequoiadendron giganteum chr1 5 CH_sgi_1548 3 3 0.0000325333
Selaginella moellendorffii scaffold_134 5 CH_smo_361 4 32 0.000912737
Selaginella moellendorffii scaffold_9 5 CH_smo_86 4 5 0.000000129661
Solanum tuberosum ST4.03ch03 5 CH_stu_300 4 4 0.0000000165216
Solanum tuberosum ST4.03ch07 5 CH_stu_644 3 4 0.0000859177
Theobroma cacao Chromosome_2 5 CH_tca_265 4 4 0.0000000241331
Trifolium pratense Tp57577_TGAC_v2_LG4 5 CH_tpr_277 4 9 0.00000144757
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_409 3 4 0.0000916899
Zea mays 8 5 CH_zma_24 8 10 2.78846e-18
Arabidopsis lyrata scaffold_5 6 CH_aly_230 4 5 0.000000155002
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 6 CH_arhy_847 3 3 0.0000247706
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 6 CH_arhy_848 3 3 0.0000247706
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 6 CH_arhy_849 3 3 0.0000247706
Brassica napus C06 6 CH_bna_508 5 16 0.000000337584
Brassica rapa A04 6 CH_bra_97 5 8 0.00000000173952
Corylus avellana 2 6 CH_cav_287 4 7 0.000000828733
Chara braunii BFEA01000332 6 CH_cbr_281 5 20 0.000224431
Chara braunii BFEA01000082 6 CH_cbr_84 6 15 0.000000251774
Citrus clementina scaffold_3 6 CH_ccl_689 3 4 0.000462944
Cardamine hirsuta Chr5 6 CH_chi_59 7 7 7.17267e-17
Davidia involucrata GWHABJS00000008 6 CH_din_621 3 5 0.000224246
Durio zibethinus NW_019167993.1 6 CH_dzi_336 3 3 0.0000175814
Fragaria x ananassa Fvb4-3 6 CH_fan_796 3 3 0.0000733804
Lonicera japonica GWHAAZE00000001 6 CH_lonja_667 5 27 0.0000217577
Magnolia biondii Chr05 6 CH_mbi_682 3 3 0.0000211719
Manihot esculenta Chromosome05 6 CH_mes_318 4 5 0.000000421105
Medicago truncatula chr8 6 CH_mtr_375 5 7 0.000000000854624
Medicago truncatula chr2 6 CH_mtr_961 3 3 0.0000466529
Papaver somniferum NW_020618825.1 6 CH_pso_101 8 20 1.6512e-16
Papaver somniferum NC_039367.1 6 CH_pso_909 3 4 0.0000843817
Populus trichocarpa Chr16 6 CH_ptr_480 3 3 0.0000146584
Rosa chinensis RcHm_v2.0_Chr3 6 CH_rch_1032 3 4 0.0000570336
Rosa chinensis RcHm_v2.0_Chr1 6 CH_rch_1448 3 8 0.000796927
Rosa chinensis RcHm_v2.0_Chr7 6 CH_rch_575 4 6 0.000000132094
Salvia bowleyana GWHASIU00000002 6 CH_sbo_278 4 6 0.0000000535744
Simmondsia chinensis GWHAASQ00000018 6 CH_sci_261 3 4 0.0000669426
Sequoiadendron giganteum chr5 6 CH_sgi_1545 3 3 0.0000325333
Sequoiadendron giganteum chr3 6 CH_sgi_1546 3 3 0.0000325333
Sequoiadendron giganteum chr1 6 CH_sgi_1547 3 3 0.0000325333
Sequoiadendron giganteum chr1 6 CH_sgi_1548 3 3 0.0000325333
Selaginella moellendorffii scaffold_134 6 CH_smo_361 4 32 0.000912737
Selaginella moellendorffii scaffold_9 6 CH_smo_86 4 5 0.000000129661
Solanum tuberosum ST4.03ch03 6 CH_stu_300 4 4 0.0000000165216
Solanum tuberosum ST4.03ch07 6 CH_stu_644 3 4 0.0000859177
Theobroma cacao Chromosome_2 6 CH_tca_265 4 4 0.0000000241331
Trifolium pratense Tp57577_TGAC_v2_LG4 6 CH_tpr_277 4 9 0.00000144757
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_409 3 4 0.0000916899
Zea mays 8 6 CH_zma_24 8 10 2.78846e-18

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001