Functional clusters
Information
- Type InterPro
- Description Dimeric alpha-beta barrel
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr4 | 5 | CH_acertr_317 | 3 | 3 | 0.000000260925 |
| Aquilegia oxysepala | CHR07 | 5 | CH_aox_148 | 4 | 11 | 0.000000168229 |
| Brassica napus | C01 | 5 | CH_bna_767 | 3 | 6 | 0.00000702633 |
| Camellia sinensis var. sinensis | Chr5 | 5 | CH_camsi_1425 | 2 | 2 | 0.000687821 |
| Cannabis sativa | NC_044376.1 | 5 | CH_cansat_268 | 3 | 4 | 0.00000144858 |
| Capsicum annuum | PGAv.1.6.scaffold644 | 5 | CH_can_847 | 2 | 2 | 0.000826105 |
| Eucalyptus grandis | Chr02 | 5 | CH_egr_172 | 7 | 7 | 1.00775e-19 |
| Eucalyptus grandis | Chr11 | 5 | CH_egr_412 | 5 | 6 | 0.00000000000452331 |
| Erythranthe guttata | scaffold_14 | 5 | CH_egut_301 | 3 | 3 | 0.000000278364 |
| Fragaria vesca | Fvb1 | 5 | CH_fve_791 | 2 | 2 | 0.000589102 |
| Lotus japonicus | chr4 | 5 | CH_lja_321 | 4 | 37 | 0.00000907557 |
| Lonicera japonica | GWHAAZE00000007 | 5 | CH_lonja_918 | 2 | 2 | 0.000179662 |
| Malus domestica | Chr16 | 5 | CH_mdo_874 | 3 | 16 | 0.0000675663 |
| Medicago truncatula | chr4 | 5 | CH_mtr_1207 | 3 | 41 | 0.000269404 |
| Olea europaea | chr19 | 5 | CH_oeu_621 | 2 | 2 | 0.000533789 |
| Oryza sativa ssp. japonica | chr01 | 5 | CH_osa_715 | 2 | 2 | 0.000528123 |
| Petunia axillaris | Peaxi162Scf00164 | 5 | CH_pax_30 | 6 | 6 | 1.16516e-16 |
| Petunia axillaris | Peaxi162Scf00002 | 5 | CH_pax_361 | 3 | 5 | 0.0000270099 |
| Prunus persica | Pp01 | 5 | CH_ppe_842 | 2 | 2 | 0.000745962 |
| Populus trichocarpa | Chr10 | 5 | CH_ptr_97 | 6 | 8 | 6.97351e-16 |
| Salvia bowleyana | GWHASIU00000007 | 5 | CH_sbo_174 | 4 | 4 | 0.0000000000197799 |
| Salix brachista | GWHAAZH00000010 | 5 | CH_sbr_101 | 5 | 6 | 0.000000000000561918 |
| Sequoiadendron giganteum | chr4 | 5 | CH_sgi_1289 | 3 | 4 | 0.00000119594 |
| Solanum tuberosum | ST4.03ch11 | 5 | CH_stu_863 | 2 | 2 | 0.000512453 |
| Vaccinium macrocarpon | chr6_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_800 | 2 | 2 | 0.000929238 |
| Vaccinium macrocarpon | chr2_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_801 | 2 | 2 | 0.000929238 |
| Vigna mungo | CM024072.1 | 5 | CH_vmu_182 | 3 | 3 | 0.000000219194 |
| Vitis vinifera | chr5 | 5 | CH_vvi_271 | 4 | 16 | 0.0000000839762 |
| Acer truncatum | chr4 | 6 | CH_acertr_317 | 3 | 3 | 0.000000260925 |
| Aquilegia oxysepala | CHR07 | 6 | CH_aox_148 | 4 | 11 | 0.000000168229 |
| Brassica napus | C01 | 6 | CH_bna_767 | 3 | 6 | 0.00000702633 |
| Camellia sinensis var. sinensis | Chr5 | 6 | CH_camsi_1425 | 2 | 2 | 0.000687821 |
| Cannabis sativa | NC_044376.1 | 6 | CH_cansat_268 | 3 | 4 | 0.00000144858 |
| Capsicum annuum | PGAv.1.6.scaffold644 | 6 | CH_can_847 | 2 | 2 | 0.000826105 |
| Eucalyptus grandis | Chr02 | 6 | CH_egr_172 | 7 | 7 | 1.00775e-19 |
| Eucalyptus grandis | Chr11 | 6 | CH_egr_412 | 5 | 6 | 0.00000000000452331 |
| Erythranthe guttata | scaffold_14 | 6 | CH_egut_301 | 3 | 3 | 0.000000278364 |
| Fragaria vesca | Fvb1 | 6 | CH_fve_791 | 2 | 2 | 0.000589102 |
| Lotus japonicus | chr4 | 6 | CH_lja_321 | 4 | 37 | 0.00000907557 |
| Lonicera japonica | GWHAAZE00000007 | 6 | CH_lonja_918 | 2 | 2 | 0.000179662 |
| Malus domestica | Chr16 | 6 | CH_mdo_874 | 3 | 16 | 0.0000675663 |
| Medicago truncatula | chr4 | 6 | CH_mtr_1207 | 3 | 41 | 0.000269404 |
| Olea europaea | chr19 | 6 | CH_oeu_621 | 2 | 2 | 0.000533789 |
| Oryza sativa ssp. japonica | chr01 | 6 | CH_osa_715 | 2 | 2 | 0.000528123 |
| Petunia axillaris | Peaxi162Scf00164 | 6 | CH_pax_30 | 6 | 6 | 1.16516e-16 |
| Petunia axillaris | Peaxi162Scf00002 | 6 | CH_pax_361 | 3 | 5 | 0.0000270099 |
| Prunus persica | Pp01 | 6 | CH_ppe_842 | 2 | 2 | 0.000745962 |
| Populus trichocarpa | Chr10 | 6 | CH_ptr_97 | 6 | 8 | 6.97351e-16 |
| Salvia bowleyana | GWHASIU00000007 | 6 | CH_sbo_174 | 4 | 4 | 0.0000000000197799 |
| Salix brachista | GWHAAZH00000010 | 6 | CH_sbr_101 | 5 | 6 | 0.000000000000561918 |
| Sequoiadendron giganteum | chr4 | 6 | CH_sgi_1289 | 3 | 4 | 0.00000119594 |
| Solanum tuberosum | ST4.03ch11 | 6 | CH_stu_863 | 2 | 2 | 0.000512453 |
| Vaccinium macrocarpon | chr6_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_800 | 2 | 2 | 0.000929238 |
| Vaccinium macrocarpon | chr2_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_801 | 2 | 2 | 0.000929238 |
| Vigna mungo | CM024072.1 | 6 | CH_vmu_182 | 3 | 3 | 0.000000219194 |
| Vitis vinifera | chr5 | 6 | CH_vvi_271 | 4 | 16 | 0.0000000839762 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |