Functional clusters
Information
- Type InterPro
- Description Aromatic-L-amino-acid decarboxylase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-8 | 5 | CH_aar_324 | 2 | 2 | 0.000273698 |
| Amborella trichopoda | AmTr_v1.0_scaffold00024 | 5 | CH_atr_357 | 3 | 12 | 0.0000727888 |
| Brassica carinata | ChrB03 | 5 | CH_bca_583 | 3 | 3 | 0.000000196034 |
| Brassica carinata | ChrB07 | 5 | CH_bca_584 | 3 | 3 | 0.000000196034 |
| Brassica rapa | A07 | 5 | CH_bra_558 | 2 | 2 | 0.00064397 |
| Cannabis sativa | NC_044376.1 | 5 | CH_cansat_32 | 7 | 10 | 5.99947e-19 |
| Corylus avellana | 2 | 5 | CH_cav_140 | 4 | 6 | 0.000000000304183 |
| Citrus clementina | scaffold_7 | 5 | CH_ccl_423 | 3 | 4 | 0.00000666017 |
| Carpinus fangiana | Cfa01 | 5 | CH_cfa_259 | 3 | 3 | 0.00000048182 |
| Carya illinoinensis | Chr09 | 5 | CH_cil_225 | 4 | 5 | 0.000000000450038 |
| Carya illinoinensis | Chr10 | 5 | CH_cil_429 | 3 | 4 | 0.00000193603 |
| Corchorus olitorius | AWUE01016374.1 | 5 | CH_col_129 | 2 | 2 | 0.000292099 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4082 | 5 | CH_cqu_901 | 3 | 25 | 0.000432684 |
| Daucus carota | DCARv2_Chr3 | 5 | CH_dca_234 | 3 | 3 | 0.000000341687 |
| Durio zibethinus | NW_019167893.1 | 5 | CH_dzi_304 | 3 | 7 | 0.00000631313 |
| Fragaria vesca | Fvb3 | 5 | CH_fve_457 | 3 | 10 | 0.0000062437 |
| Helianthus annuus | HanXRQChr17 | 5 | CH_han_479 | 3 | 3 | 0.000000268794 |
| Magnolia biondii | Chr02 | 5 | CH_mbi_181 | 4 | 4 | 0.0000000000240575 |
| Medicago truncatula | chr2 | 5 | CH_mtr_1328 | 2 | 2 | 0.000616295 |
| Olea europaea | chr21 | 5 | CH_oeu_515 | 2 | 2 | 0.000320273 |
| Physcomitrium patens | Chr04 | 5 | CH_ppa_40 | 3 | 5 | 0.0000000563133 |
| Prunus persica | Pp04 | 5 | CH_ppe_236 | 4 | 6 | 0.000000000653687 |
| Pisum sativum | chr3LG5 | 5 | CH_psa_527 | 2 | 2 | 0.00015649 |
| Papaver somniferum | NW_020624377.1 | 5 | CH_pso_215 | 5 | 7 | 0.0000000000081674 |
| Papaver somniferum | NC_039363.1 | 5 | CH_pso_662 | 3 | 3 | 0.00000377638 |
| Populus trichocarpa | Chr13 | 5 | CH_ptr_736 | 2 | 2 | 0.000578001 |
| Quercus lobata | 5 | 5 | CH_qlo_952 | 3 | 3 | 0.00000114355 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_1311 | 2 | 2 | 0.000398653 |
| Salvia bowleyana | GWHASIU00000004 | 5 | CH_sbo_693 | 2 | 2 | 0.00045498 |
| Salix brachista | GWHAAZH00000013 | 5 | CH_sbr_639 | 2 | 5 | 0.00063008 |
| Sequoiadendron giganteum | chr9 | 5 | CH_sgi_2228 | 2 | 2 | 0.000292291 |
| Solanum tuberosum | ST4.03ch07 | 5 | CH_stu_308 | 5 | 57 | 0.0000000271343 |
| Theobroma cacao | Chromosome_5 | 5 | CH_tca_327 | 3 | 3 | 0.000000281615 |
| Tripterygium wilfordii | NC_052244.1 | 5 | CH_twi_155 | 3 | 5 | 0.0000000466208 |
| Vitis vinifera | chr4 | 5 | CH_vvi_395 | 3 | 5 | 0.00000303662 |
| Aethionema arabicum | LG-8 | 6 | CH_aar_324 | 2 | 2 | 0.000273698 |
| Amborella trichopoda | AmTr_v1.0_scaffold00024 | 6 | CH_atr_357 | 3 | 12 | 0.0000727888 |
| Brassica carinata | ChrB03 | 6 | CH_bca_583 | 3 | 3 | 0.000000196034 |
| Brassica carinata | ChrB07 | 6 | CH_bca_584 | 3 | 3 | 0.000000196034 |
| Brassica rapa | A07 | 6 | CH_bra_558 | 2 | 2 | 0.00064397 |
| Cannabis sativa | NC_044376.1 | 6 | CH_cansat_32 | 7 | 10 | 5.99947e-19 |
| Corylus avellana | 2 | 6 | CH_cav_140 | 4 | 6 | 0.000000000304183 |
| Citrus clementina | scaffold_7 | 6 | CH_ccl_423 | 3 | 4 | 0.00000666017 |
| Carpinus fangiana | Cfa01 | 6 | CH_cfa_259 | 3 | 3 | 0.00000048182 |
| Carya illinoinensis | Chr09 | 6 | CH_cil_225 | 4 | 5 | 0.000000000450038 |
| Carya illinoinensis | Chr10 | 6 | CH_cil_429 | 3 | 4 | 0.00000193603 |
| Corchorus olitorius | AWUE01016374.1 | 6 | CH_col_129 | 2 | 2 | 0.000292099 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4082 | 6 | CH_cqu_901 | 3 | 25 | 0.000432684 |
| Daucus carota | DCARv2_Chr3 | 6 | CH_dca_234 | 3 | 3 | 0.000000341687 |
| Durio zibethinus | NW_019167893.1 | 6 | CH_dzi_304 | 3 | 7 | 0.00000631313 |
| Fragaria vesca | Fvb3 | 6 | CH_fve_457 | 3 | 10 | 0.0000062437 |
| Helianthus annuus | HanXRQChr17 | 6 | CH_han_479 | 3 | 3 | 0.000000268794 |
| Magnolia biondii | Chr02 | 6 | CH_mbi_181 | 4 | 4 | 0.0000000000240575 |
| Medicago truncatula | chr2 | 6 | CH_mtr_1328 | 2 | 2 | 0.000616295 |
| Olea europaea | chr21 | 6 | CH_oeu_515 | 2 | 2 | 0.000320273 |
| Physcomitrium patens | Chr04 | 6 | CH_ppa_40 | 3 | 5 | 0.0000000563133 |
| Prunus persica | Pp04 | 6 | CH_ppe_236 | 4 | 6 | 0.000000000653687 |
| Pisum sativum | chr3LG5 | 6 | CH_psa_527 | 2 | 2 | 0.00015649 |
| Papaver somniferum | NW_020624377.1 | 6 | CH_pso_215 | 5 | 7 | 0.0000000000081674 |
| Papaver somniferum | NC_039363.1 | 6 | CH_pso_662 | 3 | 3 | 0.00000377638 |
| Populus trichocarpa | Chr13 | 6 | CH_ptr_736 | 2 | 2 | 0.000578001 |
| Quercus lobata | 5 | 6 | CH_qlo_952 | 3 | 3 | 0.00000114355 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_1311 | 2 | 2 | 0.000398653 |
| Salvia bowleyana | GWHASIU00000004 | 6 | CH_sbo_693 | 2 | 2 | 0.00045498 |
| Salix brachista | GWHAAZH00000013 | 6 | CH_sbr_639 | 2 | 5 | 0.00063008 |
| Sequoiadendron giganteum | chr9 | 6 | CH_sgi_2228 | 2 | 2 | 0.000292291 |
| Solanum tuberosum | ST4.03ch07 | 6 | CH_stu_308 | 5 | 57 | 0.0000000271343 |
| Theobroma cacao | Chromosome_5 | 6 | CH_tca_327 | 3 | 3 | 0.000000281615 |
| Tripterygium wilfordii | NC_052244.1 | 6 | CH_twi_155 | 3 | 5 | 0.0000000466208 |
| Vitis vinifera | chr4 | 6 | CH_vvi_395 | 3 | 5 | 0.00000303662 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |