Functional clusters
Information
- Type InterPro
- Description Defensin-like protein
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-2 | 5 | CH_aar_151 | 3 | 3 | 0.000000124856 |
| Arabidopsis lyrata | scaffold_7 | 5 | CH_aly_203 | 4 | 4 | 0.0000000400107 |
| Arabidopsis lyrata | scaffold_5 | 5 | CH_aly_485 | 3 | 4 | 0.000156299 |
| Aquilegia oxysepala | CHR05 | 5 | CH_aox_554 | 2 | 2 | 0.000801989 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.04 | 5 | CH_arhy_1122 | 3 | 10 | 0.000370395 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.14 | 5 | CH_arhy_378 | 6 | 51 | 0.0000000017063 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.04 | 5 | CH_arhy_785 | 3 | 4 | 0.0000123659 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.14 | 5 | CH_arhy_902 | 3 | 6 | 0.0000617973 |
| Arabidopsis thaliana | Chr3 | 5 | CH_ath_271 | 4 | 9 | 0.00000109445 |
| Arabidopsis thaliana | Chr4 | 5 | CH_ath_48 | 7 | 14 | 0.00000000000000480099 |
| Brassica napus | A07 | 5 | CH_bna_1094 | 3 | 3 | 0.000127602 |
| Brassica napus | C06 | 5 | CH_bna_44 | 8 | 9 | 1.27207e-18 |
| Brassica napus | C04 | 5 | CH_bna_507 | 6 | 37 | 0.000000315623 |
| Brassica napus | A05 | 5 | CH_bna_8 | 13 | 14 | 1.73886e-33 |
| Brassica oleracea | C7 | 5 | CH_bol_488 | 3 | 3 | 0.0000227409 |
| Brassica rapa | A07 | 5 | CH_bra_137 | 4 | 4 | 0.0000000546722 |
| Brassica rapa | A05 | 5 | CH_bra_351 | 3 | 3 | 0.0000541883 |
| Brassica rapa | A08 | 5 | CH_bra_352 | 3 | 3 | 0.0000541883 |
| Brassica rapa | A09 | 5 | CH_bra_353 | 3 | 3 | 0.0000541883 |
| Coffea canephora | chr10 | 5 | CH_ccan_528 | 2 | 3 | 0.000191649 |
| Cardamine hirsuta | Chr7 | 5 | CH_chi_79 | 6 | 7 | 0.00000000000000963057 |
| Corchorus olitorius | AWUE01020342.1 | 5 | CH_col_154 | 2 | 2 | 0.000292099 |
| Capsella rubella | scaffold_7 | 5 | CH_cru_163 | 5 | 7 | 0.00000000145874 |
| Capsella rubella | scaffold_6 | 5 | CH_cru_618 | 3 | 5 | 0.000523891 |
| Cucumis sativus L. | chr5 | 5 | CH_csa_495 | 2 | 2 | 0.000834759 |
| Daucus carota | DCARv2_Chr5 | 5 | CH_dca_686 | 2 | 2 | 0.000637775 |
| Davidia involucrata | GWHABJS00000015 | 5 | CH_din_791 | 2 | 6 | 0.000750113 |
| Eucalyptus grandis | Chr11 | 5 | CH_egr_1067 | 2 | 2 | 0.0000585274 |
| Erythranthe guttata | scaffold_11 | 5 | CH_egut_712 | 2 | 5 | 0.000728067 |
| Eutrema salsugineum | scaffold_1 | 5 | CH_esa_130 | 4 | 4 | 0.00000000641907 |
| Eutrema salsugineum | scaffold_7 | 5 | CH_esa_174 | 4 | 6 | 0.0000000961849 |
| Gossypium hirsutum | A01 | 5 | CH_ghi_313 | 4 | 4 | 0.000000000505751 |
| Gossypium hirsutum | D01 | 5 | CH_ghi_359 | 4 | 5 | 0.00000000252821 |
| Glycine max | Gm06 | 5 | CH_gma_91 | 6 | 16 | 0.0000000000000709349 |
| Manihot esculenta | Chromosome08 | 5 | CH_mes_187 | 4 | 7 | 0.000000000119526 |
| Nelumbo nucifera | chr3 | 5 | CH_nnu_119 | 5 | 18 | 0.00000000150644 |
| Nelumbo nucifera | chr8 | 5 | CH_nnu_28 | 7 | 11 | 3.7115e-18 |
| Phaseolus vulgaris | Chr11 | 5 | CH_pvu_279 | 4 | 20 | 0.000000402593 |
| Salix brachista | GWHAAZH00000001 | 5 | CH_sbr_302 | 3 | 6 | 0.00000119098 |
| Solanum lycopersicum | SL4.0ch10 | 5 | CH_sly_356 | 3 | 5 | 0.000000516688 |
| Schrenkiella parvula | ch5-1 | 5 | CH_spa_291 | 2 | 2 | 0.000236202 |
| Tarenaya hassleriana | NW_010960187.1 | 5 | CH_tha_345 | 2 | 2 | 0.00069847 |
| Tarenaya hassleriana | NW_010966177.1 | 5 | CH_tha_346 | 2 | 2 | 0.00069847 |
| Zea mays | 5 | 5 | CH_zma_380 | 2 | 3 | 0.00015339 |
| Aethionema arabicum | LG-2 | 6 | CH_aar_151 | 3 | 3 | 0.000000124856 |
| Arabidopsis lyrata | scaffold_7 | 6 | CH_aly_203 | 4 | 4 | 0.0000000400107 |
| Arabidopsis lyrata | scaffold_5 | 6 | CH_aly_485 | 3 | 4 | 0.000156299 |
| Aquilegia oxysepala | CHR05 | 6 | CH_aox_554 | 2 | 2 | 0.000801989 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.04 | 6 | CH_arhy_1122 | 3 | 10 | 0.000370395 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.14 | 6 | CH_arhy_378 | 6 | 51 | 0.0000000017063 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.04 | 6 | CH_arhy_785 | 3 | 4 | 0.0000123659 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.14 | 6 | CH_arhy_902 | 3 | 6 | 0.0000617973 |
| Arabidopsis thaliana | Chr3 | 6 | CH_ath_271 | 4 | 9 | 0.00000109445 |
| Arabidopsis thaliana | Chr4 | 6 | CH_ath_48 | 7 | 14 | 0.00000000000000480099 |
| Brassica napus | A07 | 6 | CH_bna_1094 | 3 | 3 | 0.000127602 |
| Brassica napus | C06 | 6 | CH_bna_44 | 8 | 9 | 1.27207e-18 |
| Brassica napus | C04 | 6 | CH_bna_507 | 6 | 37 | 0.000000315623 |
| Brassica napus | A05 | 6 | CH_bna_8 | 13 | 14 | 1.73886e-33 |
| Brassica oleracea | C7 | 6 | CH_bol_488 | 3 | 3 | 0.0000227409 |
| Brassica rapa | A07 | 6 | CH_bra_137 | 4 | 4 | 0.0000000546722 |
| Brassica rapa | A05 | 6 | CH_bra_351 | 3 | 3 | 0.0000541883 |
| Brassica rapa | A08 | 6 | CH_bra_352 | 3 | 3 | 0.0000541883 |
| Brassica rapa | A09 | 6 | CH_bra_353 | 3 | 3 | 0.0000541883 |
| Coffea canephora | chr10 | 6 | CH_ccan_528 | 2 | 3 | 0.000191649 |
| Cardamine hirsuta | Chr7 | 6 | CH_chi_79 | 6 | 7 | 0.00000000000000963057 |
| Cucumis melo | chr08 | 6 | CH_cme_24 | 8 | 18 | 7.29507e-22 |
| Corchorus olitorius | AWUE01020342.1 | 6 | CH_col_154 | 2 | 2 | 0.000292099 |
| Capsella rubella | scaffold_7 | 6 | CH_cru_163 | 5 | 7 | 0.00000000145874 |
| Capsella rubella | scaffold_6 | 6 | CH_cru_618 | 3 | 5 | 0.000523891 |
| Cucumis sativus L. | chr5 | 6 | CH_csa_495 | 2 | 2 | 0.000834759 |
| Daucus carota | DCARv2_Chr5 | 6 | CH_dca_686 | 2 | 2 | 0.000637775 |
| Davidia involucrata | GWHABJS00000015 | 6 | CH_din_791 | 2 | 6 | 0.000750113 |
| Eucalyptus grandis | Chr11 | 6 | CH_egr_1067 | 2 | 2 | 0.0000585274 |
| Erythranthe guttata | scaffold_11 | 6 | CH_egut_712 | 2 | 5 | 0.000728067 |
| Eutrema salsugineum | scaffold_1 | 6 | CH_esa_130 | 4 | 4 | 0.00000000641907 |
| Eutrema salsugineum | scaffold_7 | 6 | CH_esa_174 | 4 | 6 | 0.0000000961849 |
| Gossypium hirsutum | A01 | 6 | CH_ghi_313 | 4 | 4 | 0.000000000505751 |
| Gossypium hirsutum | D01 | 6 | CH_ghi_359 | 4 | 5 | 0.00000000252821 |
| Glycine max | Gm06 | 6 | CH_gma_91 | 6 | 16 | 0.0000000000000709349 |
| Manihot esculenta | Chromosome08 | 6 | CH_mes_187 | 4 | 7 | 0.000000000119526 |
| Nelumbo nucifera | chr3 | 6 | CH_nnu_119 | 5 | 18 | 0.00000000150644 |
| Nelumbo nucifera | chr8 | 6 | CH_nnu_28 | 7 | 11 | 3.7115e-18 |
| Phaseolus vulgaris | Chr11 | 6 | CH_pvu_279 | 4 | 20 | 0.000000402593 |
| Salix brachista | GWHAAZH00000001 | 6 | CH_sbr_302 | 3 | 6 | 0.00000119098 |
| Solanum lycopersicum | SL4.0ch10 | 6 | CH_sly_356 | 3 | 5 | 0.000000516688 |
| Schrenkiella parvula | ch5-1 | 6 | CH_spa_291 | 2 | 2 | 0.000236202 |
| Tarenaya hassleriana | NW_010960187.1 | 6 | CH_tha_345 | 2 | 2 | 0.00069847 |
| Tarenaya hassleriana | NW_010966177.1 | 6 | CH_tha_346 | 2 | 2 | 0.00069847 |
| Zea mays | 5 | 6 | CH_zma_380 | 2 | 3 | 0.00015339 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |