Functional clusters

Information

  • Type InterPro
  • Description Glycine rich protein

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-3 5 CH_aar_344 2 2 0.000273698
Actinidia chinensis Lachesis_group5 5 CH_ach_80 3 3 0.0000000177053
Arabidopsis lyrata scaffold_3 5 CH_aly_57 6 15 0.00000000000000394823
Avicennia marina ScioBoG_12795_HRSCAF_12848 5 CH_ama_8 5 7 0.000000000000487436
Amaranthus hybridus AmaHy_arrow1_Scaffold_14 5 CH_amhyb_464 2 2 0.000841751
Amaranthus hybridus AmaHy_arrow1_Scaffold_3 5 CH_amhyb_465 2 2 0.000841751
Aquilegia oxysepala CHR03 5 CH_aox_243 3 10 0.00000462885
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 5 CH_arhy_320 6 49 0.0000000000930551
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 5 CH_arhy_330 5 16 0.000000000162576
Arabidopsis thaliana Chr2 5 CH_ath_75 6 62 0.000000000000748658
Brassica carinata ChrB08 5 CH_bca_588 3 3 0.000000196034
Brassica carinata ChrC01 5 CH_bca_720 3 4 0.000000784066
Brassica napus A03 5 CH_bna_518 3 3 0.000000421715
Brassica napus C03 5 CH_bna_519 3 3 0.000000421715
Brassica oleracea C3 5 CH_bol_852 2 2 0.000686409
Brassica rapa A03 5 CH_bra_610 2 2 0.000901558
Brassica rapa A05 5 CH_bra_611 2 2 0.000901558
Beta vulgaris Chr9_EL10_PGA_scaffold8 5 CH_bvu_202 3 3 0.000000359875
Beta vulgaris Chr6_EL10_PGA_scaffold0 5 CH_bvu_244 3 4 0.00000143926
Cannabis sativa NC_044371.1 5 CH_cansat_529 2 2 0.000393985
Coffea canephora chr3 5 CH_ccan_152 4 50 0.0000000381301
Ceratophyllum demersum 5 5 CH_cde_83 3 4 0.000000149702
Carpinus fangiana Cfa08 5 CH_cfa_207 3 3 0.0000000344157
Cardamine hirsuta Chr3 5 CH_chi_128 5 12 0.0000000000170694
Carya illinoinensis Chr11 5 CH_cil_749 2 2 0.000371897
Carya illinoinensis Chr03 5 CH_cil_750 2 2 0.000371897
Carica papaya supercontig_132 5 CH_cpa_542 2 4 0.000570342
Capsella rubella scaffold_3 5 CH_cru_54 6 10 6.91172e-17
Cucumis sativus L. chr7 5 CH_csa_228 3 7 0.00000146296
Daucus carota DCARv2_Chr5 5 CH_dca_602 2 2 0.000382665
Davidia involucrata GWHABJS00000013 5 CH_din_106 5 8 0.0000000000012136
Davidia involucrata GWHABJS00000013 5 CH_din_112 5 9 0.00000000000273019
Erigeron canadensis Conyza_canadensis_scaffold:3 5 CH_eca_36 6 16 3.27789e-17
Eucalyptus grandis Chr06 5 CH_egr_453 4 6 0.000000000045108
Erythranthe guttata scaffold_7 5 CH_egut_181 6 60 0.000000000480193
Eutrema salsugineum scaffold_4 5 CH_esa_356 3 13 0.0000869398
Fragaria vesca Fvb6 5 CH_fve_396 3 8 0.00000116579
Gossypium hirsutum D07 5 CH_ghi_1043 2 2 0.000267016
Glycine max Gm07 5 CH_gma_410 3 3 0.00000146948
Glycine max Gm14 5 CH_gma_86 6 13 0.0000000000000375964
Glycine max Gm20 5 CH_gma_94 5 5 0.0000000000000963317
Helianthus annuus HanXRQChr16 5 CH_han_172 5 18 0.000000000000859448
Hydrangea macrophylla Hma1.2p1_0133F.1 5 CH_hma_51 4 6 0.000000000102819
Lotus japonicus Contig00357 5 CH_lja_61 4 5 0.00000000000548506
Lactuca sativa Lsat_1_v8_lg_7 5 CH_lsa_49 7 13 2.49276e-21
Malus domestica Chr03 5 CH_mdo_453 3 4 0.0000000862784
Manihot esculenta Chromosome15 5 CH_mes_659 2 3 0.00054954
Medicago truncatula chr1 5 CH_mtr_145 6 9 2.0443e-16
Medicago truncatula chr5 5 CH_mtr_309 5 15 0.0000000000507662
Nelumbo nucifera chr1 5 CH_nnu_450 2 2 0.000144505
Nicotiana tabacum Nitab4.5_0000037 5 CH_nta_16 6 13 0.00000000000000429833
Olea europaea chr22 5 CH_oeu_670 2 2 0.000800683
Oryza sativa ssp. japonica chr02 5 CH_osa_268 3 3 0.000000146433
Oryza sativa ssp. japonica chr06 5 CH_osa_354 3 6 0.00000292774
Petunia axillaris Peaxi162Scf00286 5 CH_pax_82 4 5 0.0000000000261202
Punica granatum NC_045133.1 5 CH_pgr_152 4 5 0.00000000133066
Punica granatum NC_045130.1 5 CH_pgr_81 5 6 0.000000000000359498
Prunus persica Pp04 5 CH_ppe_287 4 16 0.0000000113243
Pisum sativum chr2LG1 5 CH_psa_5 12 68 1.72043e-28
Papaver somniferum NC_039366.1 5 CH_pso_501 3 3 0.000000217751
Papaver somniferum NW_020650971.1 5 CH_pso_81 6 8 6.27457e-18
Phaseolus vulgaris Chr08 5 CH_pvu_138 4 9 0.000000000149912
Quercus lobata 8 5 CH_qlo_741 3 3 0.0000000399842
Solanum lycopersicum SL4.0ch09 5 CH_sly_45 8 12 4.81552e-22
Selaginella moellendorffii scaffold_52 5 CH_smo_364 2 5 0.000933576
Schrenkiella parvula ch3-3 5 CH_spa_11 7 20 1.16296e-17
Solanum pennellii Spenn-ch09 5 CH_spe_5 11 13 1.25887e-34
Solanum tuberosum ST4.03ch09 5 CH_stu_38 8 13 1.69339e-23
Selenicereus undatus Scaffold_19641 5 CH_sun_13 7 28 1.37225e-17
Tarenaya hassleriana NW_010967707.1 5 CH_tha_251 2 2 0.000209541
Trifolium pratense Tp57577_TGAC_v2_LG4 5 CH_tpr_157 3 3 0.00000000859546
Utricularia gibba unitig_22 5 CH_ugi_222 3 8 0.000161451
Utricularia gibba unitig_92 5 CH_ugi_79 3 3 0.00000288809
Vigna mungo CM024073.1 5 CH_vmu_112 3 3 0.00000000626267
Vitis vinifera chr12 5 CH_vvi_377 3 6 0.00000173524
Vitis vinifera chr19 5 CH_vvi_779 2 2 0.00076063
Zea mays 5 5 CH_zma_155 3 3 0.0000000392171
Zea mays 9 5 CH_zma_492 2 2 0.000511313
Aethionema arabicum LG-3 6 CH_aar_344 2 2 0.000273698
Actinidia chinensis Lachesis_group5 6 CH_ach_80 3 3 0.0000000177053
Arabidopsis lyrata scaffold_3 6 CH_aly_57 6 15 0.00000000000000394823
Avicennia marina ScioBoG_12795_HRSCAF_12848 6 CH_ama_8 5 7 0.000000000000487436
Amaranthus hybridus AmaHy_arrow1_Scaffold_14 6 CH_amhyb_464 2 2 0.000841751
Amaranthus hybridus AmaHy_arrow1_Scaffold_3 6 CH_amhyb_465 2 2 0.000841751
Aquilegia oxysepala CHR03 6 CH_aox_243 3 10 0.00000462885
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 6 CH_arhy_320 6 49 0.0000000000930551
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 6 CH_arhy_330 5 16 0.000000000162576
Arabidopsis thaliana Chr2 6 CH_ath_75 6 62 0.000000000000748658
Brassica carinata ChrB08 6 CH_bca_588 3 3 0.000000196034
Brassica carinata ChrC01 6 CH_bca_720 3 4 0.000000784066
Brassica napus A03 6 CH_bna_518 3 3 0.000000421715
Brassica napus C03 6 CH_bna_519 3 3 0.000000421715
Brassica oleracea C3 6 CH_bol_852 2 2 0.000686409
Brassica rapa A03 6 CH_bra_610 2 2 0.000901558
Brassica rapa A05 6 CH_bra_611 2 2 0.000901558
Beta vulgaris Chr9_EL10_PGA_scaffold8 6 CH_bvu_202 3 3 0.000000359875
Beta vulgaris Chr6_EL10_PGA_scaffold0 6 CH_bvu_244 3 4 0.00000143926
Cannabis sativa NC_044371.1 6 CH_cansat_529 2 2 0.000393985
Coffea canephora chr3 6 CH_ccan_152 4 50 0.0000000381301
Ceratophyllum demersum 5 6 CH_cde_83 3 4 0.000000149702
Carpinus fangiana Cfa08 6 CH_cfa_207 3 3 0.0000000344157
Cardamine hirsuta Chr3 6 CH_chi_128 5 12 0.0000000000170694
Carya illinoinensis Chr11 6 CH_cil_749 2 2 0.000371897
Carya illinoinensis Chr03 6 CH_cil_750 2 2 0.000371897
Carica papaya supercontig_132 6 CH_cpa_542 2 4 0.000570342
Capsella rubella scaffold_3 6 CH_cru_54 6 10 6.91172e-17
Cucumis sativus L. chr7 6 CH_csa_228 3 7 0.00000146296
Daucus carota DCARv2_Chr5 6 CH_dca_602 2 2 0.000382665
Davidia involucrata GWHABJS00000013 6 CH_din_106 5 8 0.0000000000012136
Davidia involucrata GWHABJS00000013 6 CH_din_112 5 9 0.00000000000273019
Erigeron canadensis Conyza_canadensis_scaffold:3 6 CH_eca_36 6 16 3.27789e-17
Eucalyptus grandis Chr06 6 CH_egr_453 4 6 0.000000000045108
Erythranthe guttata scaffold_7 6 CH_egut_181 6 60 0.000000000480193
Eutrema salsugineum scaffold_4 6 CH_esa_356 3 13 0.0000869398
Fragaria vesca Fvb6 6 CH_fve_396 3 8 0.00000116579
Gossypium hirsutum D07 6 CH_ghi_1043 2 2 0.000267016
Glycine max Gm07 6 CH_gma_410 3 3 0.00000146948
Glycine max Gm14 6 CH_gma_86 6 13 0.0000000000000375964
Glycine max Gm20 6 CH_gma_94 5 5 0.0000000000000963317
Helianthus annuus HanXRQChr16 6 CH_han_172 5 18 0.000000000000859448
Hydrangea macrophylla Hma1.2p1_0133F.1 6 CH_hma_51 4 6 0.000000000102819
Lotus japonicus Contig00357 6 CH_lja_61 4 5 0.00000000000548506
Lactuca sativa Lsat_1_v8_lg_7 6 CH_lsa_49 7 13 2.49276e-21
Malus domestica Chr03 6 CH_mdo_453 3 4 0.0000000862784
Manihot esculenta Chromosome15 6 CH_mes_659 2 3 0.00054954
Medicago truncatula chr1 6 CH_mtr_145 6 9 2.0443e-16
Medicago truncatula chr5 6 CH_mtr_309 5 15 0.0000000000507662
Nelumbo nucifera chr1 6 CH_nnu_450 2 2 0.000144505
Nicotiana tabacum Nitab4.5_0000037 6 CH_nta_16 6 13 0.00000000000000429833
Olea europaea chr22 6 CH_oeu_670 2 2 0.000800683
Oryza sativa ssp. japonica chr02 6 CH_osa_268 3 3 0.000000146433
Oryza sativa ssp. japonica chr06 6 CH_osa_354 3 6 0.00000292774
Petunia axillaris Peaxi162Scf00286 6 CH_pax_82 4 5 0.0000000000261202
Punica granatum NC_045133.1 6 CH_pgr_152 4 5 0.00000000133066
Punica granatum NC_045130.1 6 CH_pgr_81 5 6 0.000000000000359498
Prunus persica Pp04 6 CH_ppe_287 4 16 0.0000000113243
Pisum sativum chr2LG1 6 CH_psa_5 12 68 1.72043e-28
Papaver somniferum NC_039366.1 6 CH_pso_501 3 3 0.000000217751
Papaver somniferum NW_020650971.1 6 CH_pso_81 6 8 6.27457e-18
Phaseolus vulgaris Chr08 6 CH_pvu_138 4 9 0.000000000149912
Quercus lobata 8 6 CH_qlo_741 3 3 0.0000000399842
Solanum lycopersicum SL4.0ch09 6 CH_sly_45 8 12 4.81552e-22
Selaginella moellendorffii scaffold_52 6 CH_smo_364 2 5 0.000933576
Schrenkiella parvula ch3-3 6 CH_spa_11 7 20 1.16296e-17
Solanum pennellii Spenn-ch09 6 CH_spe_5 11 13 1.25887e-34
Solanum tuberosum ST4.03ch09 6 CH_stu_38 8 13 1.69339e-23
Selenicereus undatus Scaffold_19641 6 CH_sun_13 7 28 1.37225e-17
Tarenaya hassleriana NW_010967707.1 6 CH_tha_251 2 2 0.000209541
Trifolium pratense Tp57577_TGAC_v2_LG4 6 CH_tpr_157 3 3 0.00000000859546
Utricularia gibba unitig_22 6 CH_ugi_222 3 8 0.000161451
Utricularia gibba unitig_92 6 CH_ugi_79 3 3 0.00000288809
Vigna mungo CM024073.1 6 CH_vmu_112 3 3 0.00000000626267
Vitis vinifera chr12 6 CH_vvi_377 3 6 0.00000173524
Vitis vinifera chr19 6 CH_vvi_779 2 2 0.00076063
Zea mays 5 6 CH_zma_155 3 3 0.0000000392171
Zea mays 9 6 CH_zma_492 2 2 0.000511313

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001