Functional clusters
Information
- Type InterPro
- Description Copine, C-terminal
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_344 | 5 | CH_aag_364 | 2 | 2 | 0.000802568 |
| Brassica carinata | ChrC03 | 5 | CH_bca_1467 | 3 | 6 | 0.000135317 |
| Camellia sinensis var. sinensis | Chr2 | 5 | CH_camsi_726 | 3 | 3 | 0.00000359562 |
| Carya illinoinensis | Chr15 | 5 | CH_cil_707 | 3 | 5 | 0.000233669 |
| Erythranthe guttata | scaffold_8 | 5 | CH_egut_125 | 5 | 5 | 0.000000000000633267 |
| Erythranthe guttata | scaffold_13 | 5 | CH_egut_370 | 3 | 3 | 0.00000361873 |
| Lactuca sativa | Lsat_1_v8_lg_0 | 5 | CH_lsa_516 | 3 | 5 | 0.00000871545 |
| Medicago truncatula | chr2 | 5 | CH_mtr_492 | 4 | 7 | 0.0000000282061 |
| Nelumbo nucifera | chr7 | 5 | CH_nnu_280 | 3 | 3 | 0.00000337248 |
| Nelumbo nucifera | chr3 | 5 | CH_nnu_281 | 3 | 3 | 0.00000337248 |
| Nicotiana tabacum | Nitab4.5_0000691 | 5 | CH_nta_167 | 3 | 8 | 0.000035361 |
| Quercus lobata | 4 | 5 | CH_qlo_1529 | 4 | 39 | 0.000244987 |
| Quercus lobata | 3 | 5 | CH_qlo_979 | 4 | 12 | 0.00000149029 |
| Salvia bowleyana | GWHASIU00000004 | 5 | CH_sbo_222 | 6 | 74 | 0.00000000137978 |
| Sechium edule | LG04 | 5 | CH_sed_278 | 3 | 4 | 0.0000170954 |
| Sequoiadendron giganteum | chr6 | 5 | CH_sgi_162 | 7 | 7 | 1.2635e-22 |
| Tarenaya hassleriana | NW_010961290.1 | 5 | CH_tha_71 | 5 | 19 | 0.00000000266195 |
| Anthoceros agrestis | Sc2ySwM_344 | 6 | CH_aag_364 | 2 | 2 | 0.000802568 |
| Brassica carinata | ChrC03 | 6 | CH_bca_1467 | 3 | 6 | 0.000135317 |
| Camellia sinensis var. sinensis | Chr2 | 6 | CH_camsi_726 | 3 | 3 | 0.00000359562 |
| Carya illinoinensis | Chr15 | 6 | CH_cil_707 | 3 | 5 | 0.000233669 |
| Erythranthe guttata | scaffold_8 | 6 | CH_egut_125 | 5 | 5 | 0.000000000000633267 |
| Erythranthe guttata | scaffold_13 | 6 | CH_egut_370 | 3 | 3 | 0.00000361873 |
| Lactuca sativa | Lsat_1_v8_lg_0 | 6 | CH_lsa_516 | 3 | 5 | 0.00000871545 |
| Medicago truncatula | chr2 | 6 | CH_mtr_492 | 4 | 7 | 0.0000000282061 |
| Nelumbo nucifera | chr7 | 6 | CH_nnu_280 | 3 | 3 | 0.00000337248 |
| Nelumbo nucifera | chr3 | 6 | CH_nnu_281 | 3 | 3 | 0.00000337248 |
| Nicotiana tabacum | Nitab4.5_0000691 | 6 | CH_nta_167 | 3 | 8 | 0.000035361 |
| Quercus lobata | 4 | 6 | CH_qlo_1529 | 4 | 39 | 0.000244987 |
| Quercus lobata | 3 | 6 | CH_qlo_979 | 4 | 12 | 0.00000149029 |
| Salvia bowleyana | GWHASIU00000004 | 6 | CH_sbo_222 | 6 | 74 | 0.00000000137978 |
| Sechium edule | LG04 | 6 | CH_sed_278 | 3 | 4 | 0.0000170954 |
| Sequoiadendron giganteum | chr6 | 6 | CH_sgi_162 | 7 | 7 | 1.2635e-22 |
| Tarenaya hassleriana | NW_010961290.1 | 6 | CH_tha_71 | 5 | 19 | 0.00000000266195 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |