Functional clusters
Information
- Type InterPro
- Description Xyloglucan endo-transglycosylase, C-terminal
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr7 | 5 | CH_acertr_178 | 5 | 12 | 0.00000000491833 |
| Actinidia chinensis | Lachesis_group24 | 5 | CH_ach_224 | 3 | 3 | 0.0000145006 |
| Arabidopsis lyrata | scaffold_9 | 5 | CH_aly_188 | 5 | 11 | 0.0000000246663 |
| Avicennia marina | ScioBoG_102839_HRSCAF_103093 | 5 | CH_ama_39 | 4 | 4 | 0.0000000527057 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_5 | 5 | CH_amhyb_268 | 3 | 4 | 0.000110453 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 5 | CH_arhy_846 | 3 | 3 | 0.0000247706 |
| Amborella trichopoda | AmTr_v1.0_scaffold00062 | 5 | CH_atr_103 | 5 | 6 | 0.0000000000951752 |
| Brassica carinata | Contig281 | 5 | CH_bca_1273 | 3 | 3 | 0.0000629784 |
| Brassica carinata | ChrC01 | 5 | CH_bca_1622 | 3 | 4 | 0.00025175 |
| Brassica napus | A02 | 5 | CH_bna_424 | 4 | 4 | 0.0000000693051 |
| Brassica napus | C09 | 5 | CH_bna_585 | 4 | 6 | 0.00000103811 |
| Camellia sinensis var. sinensis | Chr7 | 5 | CH_camsi_464 | 4 | 4 | 0.0000000515957 |
| Cannabis sativa | NC_044377.1 | 5 | CH_cansat_21 | 13 | 78 | 2.49422e-22 |
| Capsicum annuum | PGAv.1.6.scaffold584 | 5 | CH_can_270 | 4 | 4 | 0.0000000346342 |
| Capsicum annuum | PGAv.1.6.scaffold585 | 5 | CH_can_71 | 8 | 11 | 4.23547e-18 |
| Citrus clementina | scaffold_1 | 5 | CH_ccl_18 | 14 | 19 | 2.49847e-34 |
| Carya illinoinensis | Chr07 | 5 | CH_cil_112 | 6 | 6 | 0.0000000000000228058 |
| Carica papaya | supercontig_233 | 5 | CH_cpa_20 | 6 | 6 | 0.0000000000000032448 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4077 | 5 | CH_cqu_93 | 7 | 9 | 0.00000000000000649907 |
| Daucus carota | DCARv2_Chr3 | 5 | CH_dca_270 | 4 | 7 | 0.00000142286 |
| Eucalyptus grandis | Chr01 | 5 | CH_egr_1010 | 3 | 3 | 0.0000336305 |
| Erythranthe guttata | scaffold_13 | 5 | CH_egut_366 | 4 | 7 | 0.00000332398 |
| Erythranthe guttata | scaffold_11 | 5 | CH_egut_478 | 3 | 3 | 0.0000726847 |
| Fragaria vesca | Fvb6 | 5 | CH_fve_153 | 5 | 6 | 0.0000000000532423 |
| Glycine max | Gm13 | 5 | CH_gma_163 | 5 | 5 | 0.000000000100737 |
| Helianthus annuus | HanXRQChr06 | 5 | CH_han_861 | 3 | 3 | 0.0000847149 |
| Lupinus albus | Lalb_Chr12 | 5 | CH_lal_376 | 3 | 3 | 0.0000377597 |
| Nicotiana tabacum | Nitab4.5_0001004 | 5 | CH_nta_241 | 3 | 5 | 0.000319301 |
| Olea europaea | chr21 | 5 | CH_oeu_273 | 3 | 3 | 0.0000279738 |
| Olea europaea | chr21 | 5 | CH_oeu_54 | 5 | 5 | 0.0000000000197697 |
| Physcomitrium patens | Chr06 | 5 | CH_ppa_60 | 4 | 7 | 0.000000423186 |
| Quercus lobata | 8 | 5 | CH_qlo_497 | 5 | 5 | 0.0000000000730566 |
| Striga asiatica | scaffold70 | 5 | CH_sas_10 | 5 | 6 | 0.0000000000292447 |
| Salvia bowleyana | GWHASIU00000001 | 5 | CH_sbo_530 | 3 | 4 | 0.0000964505 |
| Solanum lycopersicum | SL4.0ch03 | 5 | CH_sly_277 | 4 | 4 | 0.000000035735 |
| Vigna mungo | CM024074.1 | 5 | CH_vmu_64 | 5 | 5 | 0.0000000000186332 |
| Acer truncatum | chr7 | 6 | CH_acertr_178 | 5 | 12 | 0.00000000491833 |
| Actinidia chinensis | Lachesis_group24 | 6 | CH_ach_224 | 3 | 3 | 0.0000145006 |
| Arabidopsis lyrata | scaffold_9 | 6 | CH_aly_188 | 5 | 11 | 0.0000000246663 |
| Avicennia marina | ScioBoG_102839_HRSCAF_103093 | 6 | CH_ama_39 | 4 | 4 | 0.0000000527057 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_5 | 6 | CH_amhyb_268 | 3 | 4 | 0.000110453 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 6 | CH_arhy_846 | 3 | 3 | 0.0000247706 |
| Amborella trichopoda | AmTr_v1.0_scaffold00062 | 6 | CH_atr_103 | 5 | 6 | 0.0000000000951752 |
| Brassica carinata | Contig281 | 6 | CH_bca_1273 | 3 | 3 | 0.0000629784 |
| Brassica carinata | ChrC01 | 6 | CH_bca_1622 | 3 | 4 | 0.00025175 |
| Brassica napus | A02 | 6 | CH_bna_424 | 4 | 4 | 0.0000000693051 |
| Brassica napus | C09 | 6 | CH_bna_585 | 4 | 6 | 0.00000103811 |
| Camellia sinensis var. sinensis | Chr7 | 6 | CH_camsi_464 | 4 | 4 | 0.0000000515957 |
| Cannabis sativa | NC_044377.1 | 6 | CH_cansat_21 | 13 | 78 | 2.49422e-22 |
| Capsicum annuum | PGAv.1.6.scaffold584 | 6 | CH_can_270 | 4 | 4 | 0.0000000346342 |
| Capsicum annuum | PGAv.1.6.scaffold585 | 6 | CH_can_71 | 8 | 11 | 4.23547e-18 |
| Citrus clementina | scaffold_1 | 6 | CH_ccl_18 | 14 | 19 | 2.49847e-34 |
| Carya illinoinensis | Chr07 | 6 | CH_cil_112 | 6 | 6 | 0.0000000000000228058 |
| Carica papaya | supercontig_233 | 6 | CH_cpa_20 | 6 | 6 | 0.0000000000000032448 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4077 | 6 | CH_cqu_93 | 7 | 9 | 0.00000000000000649907 |
| Daucus carota | DCARv2_Chr3 | 6 | CH_dca_270 | 4 | 7 | 0.00000142286 |
| Eucalyptus grandis | Chr01 | 6 | CH_egr_1010 | 3 | 3 | 0.0000336305 |
| Erythranthe guttata | scaffold_13 | 6 | CH_egut_366 | 4 | 7 | 0.00000332398 |
| Erythranthe guttata | scaffold_11 | 6 | CH_egut_478 | 3 | 3 | 0.0000726847 |
| Fragaria x ananassa | Fvb6-3 | 6 | CH_fan_805 | 3 | 4 | 0.0000776619 |
| Fragaria vesca | Fvb6 | 6 | CH_fve_153 | 5 | 6 | 0.0000000000532423 |
| Glycine max | Gm13 | 6 | CH_gma_163 | 5 | 5 | 0.000000000100737 |
| Helianthus annuus | HanXRQChr06 | 6 | CH_han_861 | 3 | 3 | 0.0000847149 |
| Lupinus albus | Lalb_Chr12 | 6 | CH_lal_376 | 3 | 3 | 0.0000377597 |
| Nicotiana tabacum | Nitab4.5_0001004 | 6 | CH_nta_241 | 3 | 5 | 0.000319301 |
| Olea europaea | chr21 | 6 | CH_oeu_273 | 3 | 3 | 0.0000279738 |
| Olea europaea | chr21 | 6 | CH_oeu_54 | 5 | 5 | 0.0000000000197697 |
| Physcomitrium patens | Chr06 | 6 | CH_ppa_60 | 4 | 7 | 0.000000423186 |
| Quercus lobata | 8 | 6 | CH_qlo_497 | 5 | 5 | 0.0000000000730566 |
| Striga asiatica | scaffold70 | 6 | CH_sas_10 | 5 | 6 | 0.0000000000292447 |
| Salvia bowleyana | GWHASIU00000001 | 6 | CH_sbo_530 | 3 | 4 | 0.0000964505 |
| Solanum lycopersicum | SL4.0ch03 | 6 | CH_sly_277 | 4 | 4 | 0.000000035735 |
| Vigna mungo | CM024074.1 | 6 | CH_vmu_64 | 5 | 5 | 0.0000000000186332 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |