Functional clusters

Information

  • Type InterPro
  • Description Protein of unknown function DUF1262

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr5 5 CH_acertr_301 3 3 0.0000001491
Actinidia chinensis Lachesis_group10 5 CH_ach_649 2 3 0.000977721
Arabidopsis lyrata scaffold_1 5 CH_aly_47 5 5 8.54261e-16
Avicennia marina ScioBoG_18778_HRSCAF_18863 5 CH_ama_165 2 2 0.000258665
Aquilegia oxysepala CHR03 5 CH_aox_339 2 2 0.0000801989
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.11 5 CH_arhy_342 4 5 0.00000000028777
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 5 CH_arhy_552 3 3 0.00000038452
Arabidopsis thaliana Chr1 5 CH_ath_10 9 10 6.43553e-32
Amborella trichopoda AmTr_v1.0_scaffold00088 5 CH_atr_60 5 11 0.000000000000137999
Brassica carinata ChrB08 5 CH_bca_106 5 6 0.0000000000000410409
Brassica carinata ChrC07 5 CH_bca_213 4 4 0.000000000053335
Brassica napus C08 5 CH_bna_200 4 4 0.0000000000743648
Brassica napus A08 5 CH_bna_535 3 3 0.000000500786
Brassica napus A09 5 CH_bna_536 3 3 0.000000500786
Brassica napus C08 5 CH_bna_645 3 4 0.0000020029
Brassica oleracea C8 5 CH_bol_44 5 5 0.00000000000000215754
Brassica rapa A09 5 CH_bra_141 3 3 0.0000000552942
Beta vulgaris Chr6_EL10_PGA_scaffold0 5 CH_bvu_46 6 19 0.0000000000000166128
Camellia sinensis var. sinensis Chr6 5 CH_camsi_36 7 7 5.85861e-24
Cannabis sativa NC_044379.1 5 CH_cansat_223 3 3 0.000000226376
Cannabis sativa NC_044379.1 5 CH_cansat_311 3 7 0.00000791901
Corylus avellana 9 5 CH_cav_307 4 52 0.0000018243
Coffea canephora chr11 5 CH_ccan_146 3 13 0.0000000239418
Cardamine hirsuta Chr1 5 CH_chi_65 5 5 0.00000000000000102737
Carya illinoinensis Chr05 5 CH_cil_65 6 6 1.44136e-19
Chenopodium quinoa C_Quinoa_Scaffold_2646 5 CH_cqu_126 5 7 0.000000000000628616
Chenopodium quinoa C_Quinoa_Scaffold_1000 5 CH_cqu_84 6 10 0.00000000000000104231
Capsella rubella scaffold_1 5 CH_cru_37 6 6 3.29219e-19
Cucumis sativus L. chr5 5 CH_csa_165 3 3 0.0000000418111
Daucus carota DCARv2_Chr7 5 CH_dca_3 10 11 1.36264e-33
Eucalyptus grandis Chr02 5 CH_egr_362 4 4 0.000000000000601504
Erythranthe guttata scaffold_5 5 CH_egut_595 2 2 0.000218444
Eutrema salsugineum scaffold_5 5 CH_esa_156 3 3 0.0000000347941
Fragaria vesca Fvb4 5 CH_fve_84 5 9 0.000000000000011382
Helianthus annuus HanXRQChr15 5 CH_han_1056 2 5 0.000386406
Lotus japonicus chr2 5 CH_lja_149 3 3 0.0000000306812
Lactuca sativa Lsat_1_v8_lg_3 5 CH_lsa_315 3 5 0.0000000396294
Magnolia biondii Chr15 5 CH_mbi_83 6 20 2.35608e-16
Malus domestica Chr16 5 CH_mdo_1407 2 2 0.000796344
Malus domestica Chr13 5 CH_mdo_226 4 6 0.0000000000858804
Medicago truncatula chr5 5 CH_mtr_193 5 8 0.0000000000000251327
Nelumbo nucifera chr3 5 CH_nnu_185 3 4 0.0000000556837
Oryza sativa ssp. japonica chr08 5 CH_osa_42 6 9 7.76632e-19
Petunia axillaris Peaxi162Scf00198 5 CH_pax_631 2 2 0.000422134
Prunus persica Pp01 5 CH_ppe_114 5 5 0.00000000000000139373
Populus trichocarpa Chr08 5 CH_ptr_752 2 2 0.000578001
Phaseolus vulgaris Chr03 5 CH_pvu_224 3 3 0.0000000323906
Quercus lobata 8 5 CH_qlo_839 3 3 0.000000223911
Rosa chinensis RcHm_v2.0_Chr4 5 CH_rch_323 4 7 0.00000000003326
Rhododendron simsii chr12 5 CH_rsi_266 4 8 0.000000000282117
Salix brachista GWHAAZH00000008 5 CH_sbr_256 3 3 0.000000119127
Simmondsia chinensis GWHAASQ00000004 5 CH_sci_527 2 2 0.000851426
Sechium edule LG07 5 CH_sed_219 4 42 0.00000182267
Sequoiadendron giganteum chr5 5 CH_sgi_264 6 9 1.45198e-17
Solanum pennellii Spenn-ch05 5 CH_spe_765 2 3 0.000400297
Solanum tuberosum ST4.03ch05 5 CH_stu_710 2 2 0.000153736
Selenicereus undatus Scaffold_19641 5 CH_sun_336 2 2 0.000435983
Theobroma cacao Chromosome_2 5 CH_tca_689 2 2 0.000439432
Trifolium pratense Tp57577_TGAC_v2_scaf_407 5 CH_tpr_75 4 4 0.00000000000650703
Tripterygium wilfordii NC_052253.1 5 CH_twi_146 3 3 0.0000000186494
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_284 3 7 0.00000181281
Vigna mungo CM024074.1 5 CH_vmu_137 3 3 0.0000000250507
Vitis vinifera chr1 5 CH_vvi_510 2 2 0.000076063
Acer truncatum chr5 6 CH_acertr_301 3 3 0.0000001491
Actinidia chinensis Lachesis_group10 6 CH_ach_649 2 3 0.000977721
Arabidopsis lyrata scaffold_1 6 CH_aly_47 5 5 8.54261e-16
Avicennia marina ScioBoG_18778_HRSCAF_18863 6 CH_ama_165 2 2 0.000258665
Aquilegia oxysepala CHR03 6 CH_aox_339 2 2 0.0000801989
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.11 6 CH_arhy_342 4 5 0.00000000028777
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 6 CH_arhy_552 3 3 0.00000038452
Arabidopsis thaliana Chr1 6 CH_ath_10 9 10 6.43553e-32
Amborella trichopoda AmTr_v1.0_scaffold00088 6 CH_atr_60 5 11 0.000000000000137999
Brassica carinata ChrB08 6 CH_bca_106 5 6 0.0000000000000410409
Brassica carinata ChrC07 6 CH_bca_213 4 4 0.000000000053335
Brassica napus C08 6 CH_bna_200 4 4 0.0000000000743648
Brassica napus A08 6 CH_bna_535 3 3 0.000000500786
Brassica napus A09 6 CH_bna_536 3 3 0.000000500786
Brassica napus C08 6 CH_bna_645 3 4 0.0000020029
Brassica oleracea C8 6 CH_bol_44 5 5 0.00000000000000215754
Brassica rapa A09 6 CH_bra_141 3 3 0.0000000552942
Beta vulgaris Chr6_EL10_PGA_scaffold0 6 CH_bvu_46 6 19 0.0000000000000166128
Camellia sinensis var. sinensis Chr6 6 CH_camsi_36 7 7 5.85861e-24
Cannabis sativa NC_044379.1 6 CH_cansat_223 3 3 0.000000226376
Cannabis sativa NC_044379.1 6 CH_cansat_311 3 7 0.00000791901
Corylus avellana 9 6 CH_cav_307 4 52 0.0000018243
Coffea canephora chr11 6 CH_ccan_146 3 13 0.0000000239418
Cardamine hirsuta Chr1 6 CH_chi_65 5 5 0.00000000000000102737
Carya illinoinensis Chr05 6 CH_cil_65 6 6 1.44136e-19
Cucumis melo chr10 6 CH_cme_142 3 3 0.0000000267031
Chenopodium quinoa C_Quinoa_Scaffold_2646 6 CH_cqu_126 5 7 0.000000000000628616
Chenopodium quinoa C_Quinoa_Scaffold_1000 6 CH_cqu_84 6 10 0.00000000000000104231
Capsella rubella scaffold_1 6 CH_cru_37 6 6 3.29219e-19
Cucumis sativus L. chr5 6 CH_csa_165 3 3 0.0000000418111
Daucus carota DCARv2_Chr7 6 CH_dca_3 10 11 1.36264e-33
Eucalyptus grandis Chr02 6 CH_egr_362 4 4 0.000000000000601504
Erythranthe guttata scaffold_5 6 CH_egut_595 2 2 0.000218444
Eutrema salsugineum scaffold_5 6 CH_esa_156 3 3 0.0000000347941
Fragaria x ananassa Fvb4-1 6 CH_fan_1080 2 2 0.000518101
Fragaria vesca Fvb4 6 CH_fve_84 5 9 0.000000000000011382
Helianthus annuus HanXRQChr15 6 CH_han_1056 2 5 0.000386406
Lotus japonicus chr2 6 CH_lja_149 3 3 0.0000000306812
Lactuca sativa Lsat_1_v8_lg_3 6 CH_lsa_315 3 5 0.0000000396294
Magnolia biondii Chr15 6 CH_mbi_83 6 20 2.35608e-16
Malus domestica Chr16 6 CH_mdo_1407 2 2 0.000796344
Malus domestica Chr13 6 CH_mdo_226 4 6 0.0000000000858804
Medicago truncatula chr5 6 CH_mtr_193 5 8 0.0000000000000251327
Nelumbo nucifera chr3 6 CH_nnu_185 3 4 0.0000000556837
Oryza sativa ssp. japonica chr08 6 CH_osa_42 6 9 7.76632e-19
Petunia axillaris Peaxi162Scf00198 6 CH_pax_631 2 2 0.000422134
Prunus persica Pp01 6 CH_ppe_114 5 5 0.00000000000000139373
Populus trichocarpa Chr08 6 CH_ptr_752 2 2 0.000578001
Phaseolus vulgaris Chr03 6 CH_pvu_224 3 3 0.0000000323906
Quercus lobata 8 6 CH_qlo_839 3 3 0.000000223911
Rosa chinensis RcHm_v2.0_Chr4 6 CH_rch_323 4 7 0.00000000003326
Rhododendron simsii chr12 6 CH_rsi_266 4 8 0.000000000282117
Salix brachista GWHAAZH00000008 6 CH_sbr_256 3 3 0.000000119127
Simmondsia chinensis GWHAASQ00000004 6 CH_sci_527 2 2 0.000851426
Sechium edule LG07 6 CH_sed_219 4 42 0.00000182267
Sequoiadendron giganteum chr5 6 CH_sgi_264 6 9 1.45198e-17
Solanum pennellii Spenn-ch05 6 CH_spe_765 2 3 0.000400297
Solanum tuberosum ST4.03ch05 6 CH_stu_710 2 2 0.000153736
Selenicereus undatus Scaffold_19641 6 CH_sun_336 2 2 0.000435983
Theobroma cacao Chromosome_2 6 CH_tca_689 2 2 0.000439432
Trifolium pratense Tp57577_TGAC_v2_scaf_407 6 CH_tpr_75 4 4 0.00000000000650703
Tripterygium wilfordii NC_052253.1 6 CH_twi_146 3 3 0.0000000186494
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_284 3 7 0.00000181281
Vigna mungo CM024074.1 6 CH_vmu_137 3 3 0.0000000250507
Vitis vinifera chr1 6 CH_vvi_510 2 2 0.000076063

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001