Functional clusters
Information
- Type InterPro
- Description Plant self-incompatibility response
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-6 | 5 | CH_aar_389 | 2 | 2 | 0.000547395 |
| Arabidopsis lyrata | scaffold_2 | 5 | CH_aly_163 | 4 | 4 | 0.00000000631099 |
| Arabidopsis lyrata | scaffold_6 | 5 | CH_aly_703 | 3 | 9 | 0.00084283 |
| Arabidopsis thaliana | Chr1 | 5 | CH_ath_97 | 5 | 8 | 0.0000000000277859 |
| Brassica napus | A03 | 5 | CH_bna_1088 | 3 | 5 | 0.000120981 |
| Brassica napus | A01 | 5 | CH_bna_332 | 4 | 4 | 0.00000000561813 |
| Brassica napus | BNapus_Darmor_BZH_scaffold_38 | 5 | CH_bna_438 | 4 | 6 | 0.0000000842091 |
| Brassica napus | C01 | 5 | CH_bna_818 | 3 | 3 | 0.0000121067 |
| Brassica napus | C07 | 5 | CH_bna_971 | 3 | 4 | 0.0000484096 |
| Brassica oleracea | C1 | 5 | CH_bol_380 | 3 | 3 | 0.00000246801 |
| Carica papaya | supercontig_152 | 5 | CH_cpa_636 | 2 | 5 | 0.000950525 |
| Capsella rubella | scaffold_7 | 5 | CH_cru_432 | 3 | 4 | 0.0000648828 |
| Capsella rubella | scaffold_3 | 5 | CH_cru_433 | 3 | 4 | 0.0000648828 |
| Capsella rubella | scaffold_2 | 5 | CH_cru_499 | 3 | 5 | 0.000162108 |
| Cucumis sativus L. | chr5 | 5 | CH_csa_342 | 2 | 2 | 0.0000834759 |
| Eutrema salsugineum | scaffold_8 | 5 | CH_esa_125 | 5 | 13 | 0.00000000376049 |
| Eutrema salsugineum | scaffold_1 | 5 | CH_esa_85 | 5 | 6 | 0.0000000000175907 |
| Gossypium hirsutum | D13 | 5 | CH_ghi_239 | 4 | 4 | 0.00000000000719646 |
| Gossypium raimondii | Chr13 | 5 | CH_gra_137 | 4 | 4 | 0.00000000000693428 |
| Manihot esculenta | Chromosome09 | 5 | CH_mes_79 | 6 | 8 | 5.34984e-19 |
| Medicago truncatula | chr7 | 5 | CH_mtr_873 | 3 | 15 | 0.0000230244 |
| Petunia axillaris | Peaxi162Scf00078 | 5 | CH_pax_520 | 2 | 3 | 0.00021106 |
| Phaseolus vulgaris | Chr08 | 5 | CH_pvu_182 | 4 | 19 | 0.0000000046099 |
| Aethionema arabicum | LG-6 | 6 | CH_aar_389 | 2 | 2 | 0.000547395 |
| Arabidopsis lyrata | scaffold_2 | 6 | CH_aly_163 | 4 | 4 | 0.00000000631099 |
| Arabidopsis lyrata | scaffold_6 | 6 | CH_aly_703 | 3 | 9 | 0.00084283 |
| Arabidopsis thaliana | Chr1 | 6 | CH_ath_97 | 5 | 8 | 0.0000000000277859 |
| Brassica napus | A03 | 6 | CH_bna_1088 | 3 | 5 | 0.000120981 |
| Brassica napus | A01 | 6 | CH_bna_332 | 4 | 4 | 0.00000000561813 |
| Brassica napus | BNapus_Darmor_BZH_scaffold_38 | 6 | CH_bna_438 | 4 | 6 | 0.0000000842091 |
| Brassica napus | C01 | 6 | CH_bna_818 | 3 | 3 | 0.0000121067 |
| Brassica napus | C07 | 6 | CH_bna_971 | 3 | 4 | 0.0000484096 |
| Brassica oleracea | C1 | 6 | CH_bol_380 | 3 | 3 | 0.00000246801 |
| Carica papaya | supercontig_152 | 6 | CH_cpa_636 | 2 | 5 | 0.000950525 |
| Capsella rubella | scaffold_7 | 6 | CH_cru_432 | 3 | 4 | 0.0000648828 |
| Capsella rubella | scaffold_3 | 6 | CH_cru_433 | 3 | 4 | 0.0000648828 |
| Capsella rubella | scaffold_2 | 6 | CH_cru_499 | 3 | 5 | 0.000162108 |
| Cucumis sativus L. | chr5 | 6 | CH_csa_342 | 2 | 2 | 0.0000834759 |
| Eutrema salsugineum | scaffold_8 | 6 | CH_esa_125 | 5 | 13 | 0.00000000376049 |
| Eutrema salsugineum | scaffold_1 | 6 | CH_esa_85 | 5 | 6 | 0.0000000000175907 |
| Gossypium hirsutum | D13 | 6 | CH_ghi_239 | 4 | 4 | 0.00000000000719646 |
| Gossypium raimondii | Chr13 | 6 | CH_gra_137 | 4 | 4 | 0.00000000000693428 |
| Manihot esculenta | Chromosome09 | 6 | CH_mes_79 | 6 | 8 | 5.34984e-19 |
| Medicago truncatula | chr7 | 6 | CH_mtr_873 | 3 | 15 | 0.0000230244 |
| Petunia axillaris | Peaxi162Scf00078 | 6 | CH_pax_520 | 2 | 3 | 0.00021106 |
| Phaseolus vulgaris | Chr08 | 6 | CH_pvu_182 | 4 | 19 | 0.0000000046099 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |