Functional clusters
Information
- Type InterPro
- Description Nodulin-like
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_228 | 5 | CH_aag_222 | 3 | 9 | 0.0000972477 |
| Acer truncatum | chr9 | 5 | CH_acertr_416 | 3 | 3 | 0.0000050694 |
| Arabidopsis lyrata | scaffold_3 | 5 | CH_aly_160 | 4 | 4 | 0.00000000516354 |
| Brassica carinata | ChrB06 | 5 | CH_bca_208 | 6 | 17 | 0.0000000000448712 |
| Brassica carinata | ChrB02 | 5 | CH_bca_233 | 5 | 7 | 0.000000000137579 |
| Brassica napus | C06 | 5 | CH_bna_1322 | 3 | 6 | 0.000390421 |
| Cannabis sativa | NC_044371.1 | 5 | CH_cansat_143 | 4 | 4 | 0.00000000329256 |
| Cannabis sativa | NC_044372.1 | 5 | CH_cansat_381 | 3 | 5 | 0.0000626204 |
| Capsicum annuum | PGAv.1.6.scaffold459 | 5 | CH_can_488 | 3 | 4 | 0.0000278319 |
| Corylus avellana | 11 | 5 | CH_cav_581 | 3 | 4 | 0.000158408 |
| Corylus avellana | 1 | 5 | CH_cav_843 | 3 | 6 | 0.000790703 |
| Carpinus fangiana | Cfa04 | 5 | CH_cfa_377 | 3 | 3 | 0.0000386746 |
| Carpinus fangiana | Cfa01 | 5 | CH_cfa_70 | 7 | 11 | 0.0000000000000128592 |
| Cardamine hirsuta | Chr4 | 5 | CH_chi_386 | 3 | 3 | 0.00000694453 |
| Carya illinoinensis | Chr01 | 5 | CH_cil_182 | 5 | 5 | 0.0000000000188126 |
| Carya illinoinensis | Chr02 | 5 | CH_cil_327 | 4 | 5 | 0.000000112323 |
| Citrullus lanatus | CG_Chr03 | 5 | CH_cla_17 | 7 | 10 | 0.00000000000000221057 |
| Citrullus lanatus | CG_Chr06 | 5 | CH_cla_181 | 3 | 3 | 0.0000271518 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1675 | 5 | CH_cqu_102 | 6 | 6 | 0.0000000000000327669 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3422 | 5 | CH_cqu_103 | 6 | 6 | 0.0000000000000327669 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3514 | 5 | CH_cqu_289 | 4 | 4 | 0.0000000393864 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3333 | 5 | CH_cqu_632 | 3 | 3 | 0.0000415605 |
| Cucumis sativus L. | chr5 | 5 | CH_csa_48 | 7 | 8 | 5.6036e-16 |
| Cucumis sativus L. | chr1 | 5 | CH_csa_52 | 8 | 18 | 0.00000000000000304645 |
| Daucus carota | DCARv2_Chr4 | 5 | CH_dca_332 | 3 | 3 | 0.00000811507 |
| Davidia involucrata | GWHABJS00000019 | 5 | CH_din_199 | 4 | 4 | 0.00000000891398 |
| Davidia involucrata | GWHABJS00000009 | 5 | CH_din_515 | 3 | 5 | 0.000136956 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 5 | CH_eca_385 | 3 | 3 | 0.00000292671 |
| Eucalyptus grandis | Chr07 | 5 | CH_egr_169 | 9 | 18 | 9.4634e-20 |
| Eucalyptus grandis | Chr01 | 5 | CH_egr_983 | 3 | 3 | 0.0000187755 |
| Fragaria vesca | Fvb3 | 5 | CH_fve_451 | 3 | 3 | 0.00000504439 |
| Fragaria vesca | Fvb7 | 5 | CH_fve_737 | 3 | 9 | 0.000422756 |
| Glycine max | Gm10 | 5 | CH_gma_521 | 3 | 3 | 0.0000182301 |
| Glycine max | Gm20 | 5 | CH_gma_522 | 3 | 3 | 0.0000182301 |
| Helianthus annuus | HanXRQChr16 | 5 | CH_han_324 | 6 | 37 | 0.00000000264243 |
| Lupinus albus | Lalb_Chr06 | 5 | CH_lal_371 | 3 | 4 | 0.0000292568 |
| Lotus japonicus | chr2 | 5 | CH_lja_199 | 4 | 5 | 0.000000197085 |
| Lotus japonicus | chr5 | 5 | CH_lja_373 | 3 | 3 | 0.0000380447 |
| Lonicera japonica | GWHAAZE00000003 | 5 | CH_lonja_321 | 6 | 32 | 0.00000000156685 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 5 | CH_lsa_507 | 3 | 3 | 0.00000701873 |
| Malus domestica | Chr01 | 5 | CH_mdo_747 | 3 | 3 | 0.0000129079 |
| Malus domestica | Chr11 | 5 | CH_mdo_858 | 3 | 4 | 0.0000516077 |
| Medicago truncatula | chr1 | 5 | CH_mtr_381 | 4 | 4 | 0.00000000100817 |
| Olea europaea | chr10 | 5 | CH_oeu_106 | 4 | 6 | 0.0000000124503 |
| Petunia axillaris | Peaxi162Scf00145 | 5 | CH_pax_665 | 3 | 8 | 0.000472875 |
| Prunus persica | Pp06 | 5 | CH_ppe_378 | 4 | 9 | 0.000000606767 |
| Prunus persica | Pp02 | 5 | CH_ppe_474 | 3 | 3 | 0.00000808845 |
| Pisum sativum | chr6LG2 | 5 | CH_psa_411 | 3 | 6 | 0.000045676 |
| Papaver somniferum | NW_020628818.1 | 5 | CH_pso_154 | 7 | 23 | 0.0000000000000808908 |
| Papaver somniferum | NC_039364.1 | 5 | CH_pso_403 | 4 | 5 | 0.0000000211615 |
| Papaver somniferum | NC_039366.1 | 5 | CH_pso_96 | 7 | 11 | 1.09365e-16 |
| Phaseolus vulgaris | Chr07 | 5 | CH_pvu_359 | 3 | 3 | 0.00000923132 |
| Quercus lobata | 8 | 5 | CH_qlo_246 | 8 | 14 | 1.08703e-16 |
| Quercus lobata | 7 | 5 | CH_qlo_754 | 4 | 4 | 0.0000000462147 |
| Quercus lobata | 10 | 5 | CH_qlo_82 | 11 | 14 | 8.16395e-27 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_1039 | 3 | 5 | 0.0000619365 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 5 | CH_rch_1040 | 3 | 5 | 0.0000619365 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_1159 | 3 | 6 | 0.000123828 |
| Rhododendron simsii | chr03 | 5 | CH_rsi_160 | 7 | 16 | 0.000000000000100988 |
| Rhododendron simsii | chr01 | 5 | CH_rsi_601 | 3 | 3 | 0.0000228248 |
| Salvia bowleyana | GWHASIU00000004 | 5 | CH_sbo_524 | 4 | 29 | 0.000084043 |
| Salvia bowleyana | GWHASIU00000006 | 5 | CH_sbo_752 | 4 | 48 | 0.000683243 |
| Sechium edule | LG01 | 5 | CH_sed_297 | 3 | 3 | 0.0000416554 |
| Sequoiadendron giganteum | chr4 | 5 | CH_sgi_554 | 6 | 11 | 0.00000000000784805 |
| Sequoiadendron giganteum | chr8 | 5 | CH_sgi_753 | 5 | 9 | 0.00000000266439 |
| Sequoiadendron giganteum | chr2 | 5 | CH_sgi_967 | 4 | 4 | 0.0000000256029 |
| Solanum lycopersicum | SL4.0ch11 | 5 | CH_sly_462 | 3 | 3 | 0.00000687296 |
| Selaginella moellendorffii | scaffold_10 | 5 | CH_smo_105 | 4 | 9 | 0.000000558702 |
| Solanum tuberosum | ST4.03ch01 | 5 | CH_stu_742 | 3 | 6 | 0.000204552 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 5 | CH_tpr_127 | 4 | 4 | 0.00000000130271 |
| Vaccinium macrocarpon | chr12_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_363 | 3 | 3 | 0.0000172273 |
| Vigna mungo | CM024071.1 | 5 | CH_vmu_262 | 3 | 3 | 0.00000964452 |
| Vitis vinifera | chr13 | 5 | CH_vvi_442 | 3 | 4 | 0.0000194323 |
| Zea mays | 2 | 5 | CH_zma_367 | 3 | 4 | 0.00011193 |
| Anthoceros agrestis | Sc2ySwM_228 | 6 | CH_aag_222 | 3 | 9 | 0.0000972477 |
| Acer truncatum | chr9 | 6 | CH_acertr_416 | 3 | 3 | 0.0000050694 |
| Arabidopsis lyrata | scaffold_3 | 6 | CH_aly_160 | 4 | 4 | 0.00000000516354 |
| Brassica carinata | ChrB06 | 6 | CH_bca_208 | 6 | 17 | 0.0000000000448712 |
| Brassica carinata | ChrB02 | 6 | CH_bca_233 | 5 | 7 | 0.000000000137579 |
| Brassica napus | C06 | 6 | CH_bna_1322 | 3 | 6 | 0.000390421 |
| Cannabis sativa | NC_044371.1 | 6 | CH_cansat_143 | 4 | 4 | 0.00000000329256 |
| Cannabis sativa | NC_044372.1 | 6 | CH_cansat_381 | 3 | 5 | 0.0000626204 |
| Capsicum annuum | PGAv.1.6.scaffold459 | 6 | CH_can_488 | 3 | 4 | 0.0000278319 |
| Corylus avellana | 11 | 6 | CH_cav_581 | 3 | 4 | 0.000158408 |
| Corylus avellana | 1 | 6 | CH_cav_843 | 3 | 6 | 0.000790703 |
| Carpinus fangiana | Cfa04 | 6 | CH_cfa_377 | 3 | 3 | 0.0000386746 |
| Carpinus fangiana | Cfa01 | 6 | CH_cfa_70 | 7 | 11 | 0.0000000000000128592 |
| Cardamine hirsuta | Chr4 | 6 | CH_chi_386 | 3 | 3 | 0.00000694453 |
| Carya illinoinensis | Chr01 | 6 | CH_cil_182 | 5 | 5 | 0.0000000000188126 |
| Carya illinoinensis | Chr02 | 6 | CH_cil_327 | 4 | 5 | 0.000000112323 |
| Citrullus lanatus | CG_Chr03 | 6 | CH_cla_17 | 7 | 10 | 0.00000000000000221057 |
| Citrullus lanatus | CG_Chr06 | 6 | CH_cla_181 | 3 | 3 | 0.0000271518 |
| Cucumis melo | chr10 | 6 | CH_cme_157 | 4 | 5 | 0.0000000781134 |
| Cucumis melo | chr04 | 6 | CH_cme_338 | 3 | 5 | 0.000195019 |
| Cucumis melo | chr12 | 6 | CH_cme_75 | 7 | 27 | 0.00000000000540941 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1675 | 6 | CH_cqu_102 | 6 | 6 | 0.0000000000000327669 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3422 | 6 | CH_cqu_103 | 6 | 6 | 0.0000000000000327669 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3514 | 6 | CH_cqu_289 | 4 | 4 | 0.0000000393864 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3333 | 6 | CH_cqu_632 | 3 | 3 | 0.0000415605 |
| Cucumis sativus L. | chr5 | 6 | CH_csa_48 | 7 | 8 | 5.6036e-16 |
| Cucumis sativus L. | chr1 | 6 | CH_csa_52 | 8 | 18 | 0.00000000000000304645 |
| Daucus carota | DCARv2_Chr4 | 6 | CH_dca_332 | 3 | 3 | 0.00000811507 |
| Davidia involucrata | GWHABJS00000019 | 6 | CH_din_199 | 4 | 4 | 0.00000000891398 |
| Davidia involucrata | GWHABJS00000009 | 6 | CH_din_515 | 3 | 5 | 0.000136956 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 6 | CH_eca_385 | 3 | 3 | 0.00000292671 |
| Eucalyptus grandis | Chr07 | 6 | CH_egr_169 | 9 | 18 | 9.4634e-20 |
| Eucalyptus grandis | Chr01 | 6 | CH_egr_983 | 3 | 3 | 0.0000187755 |
| Fragaria vesca | Fvb3 | 6 | CH_fve_451 | 3 | 3 | 0.00000504439 |
| Fragaria vesca | Fvb7 | 6 | CH_fve_737 | 3 | 9 | 0.000422756 |
| Glycine max | Gm10 | 6 | CH_gma_521 | 3 | 3 | 0.0000182301 |
| Glycine max | Gm20 | 6 | CH_gma_522 | 3 | 3 | 0.0000182301 |
| Helianthus annuus | HanXRQChr16 | 6 | CH_han_324 | 6 | 37 | 0.00000000264243 |
| Lupinus albus | Lalb_Chr06 | 6 | CH_lal_371 | 3 | 4 | 0.0000292568 |
| Lotus japonicus | chr2 | 6 | CH_lja_199 | 4 | 5 | 0.000000197085 |
| Lotus japonicus | chr5 | 6 | CH_lja_373 | 3 | 3 | 0.0000380447 |
| Lonicera japonica | GWHAAZE00000003 | 6 | CH_lonja_321 | 6 | 32 | 0.00000000156685 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 6 | CH_lsa_507 | 3 | 3 | 0.00000701873 |
| Malus domestica | Chr01 | 6 | CH_mdo_747 | 3 | 3 | 0.0000129079 |
| Malus domestica | Chr11 | 6 | CH_mdo_858 | 3 | 4 | 0.0000516077 |
| Medicago truncatula | chr1 | 6 | CH_mtr_381 | 4 | 4 | 0.00000000100817 |
| Olea europaea | chr10 | 6 | CH_oeu_106 | 4 | 6 | 0.0000000124503 |
| Petunia axillaris | Peaxi162Scf00145 | 6 | CH_pax_665 | 3 | 8 | 0.000472875 |
| Prunus persica | Pp06 | 6 | CH_ppe_378 | 4 | 9 | 0.000000606767 |
| Prunus persica | Pp02 | 6 | CH_ppe_474 | 3 | 3 | 0.00000808845 |
| Pisum sativum | chr6LG2 | 6 | CH_psa_411 | 3 | 6 | 0.000045676 |
| Papaver somniferum | NW_020628818.1 | 6 | CH_pso_154 | 7 | 23 | 0.0000000000000808908 |
| Papaver somniferum | NC_039364.1 | 6 | CH_pso_403 | 4 | 5 | 0.0000000211615 |
| Papaver somniferum | NC_039366.1 | 6 | CH_pso_96 | 7 | 11 | 1.09365e-16 |
| Phaseolus vulgaris | Chr07 | 6 | CH_pvu_359 | 3 | 3 | 0.00000923132 |
| Quercus lobata | 8 | 6 | CH_qlo_246 | 8 | 14 | 1.08703e-16 |
| Quercus lobata | 7 | 6 | CH_qlo_754 | 4 | 4 | 0.0000000462147 |
| Quercus lobata | 10 | 6 | CH_qlo_82 | 11 | 14 | 8.16395e-27 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_1039 | 3 | 5 | 0.0000619365 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 6 | CH_rch_1040 | 3 | 5 | 0.0000619365 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_1159 | 3 | 6 | 0.000123828 |
| Rhododendron simsii | chr03 | 6 | CH_rsi_160 | 7 | 16 | 0.000000000000100988 |
| Rhododendron simsii | chr01 | 6 | CH_rsi_601 | 3 | 3 | 0.0000228248 |
| Salvia bowleyana | GWHASIU00000004 | 6 | CH_sbo_524 | 4 | 29 | 0.000084043 |
| Salvia bowleyana | GWHASIU00000006 | 6 | CH_sbo_752 | 4 | 48 | 0.000683243 |
| Sechium edule | LG01 | 6 | CH_sed_297 | 3 | 3 | 0.0000416554 |
| Sequoiadendron giganteum | chr4 | 6 | CH_sgi_554 | 6 | 11 | 0.00000000000784805 |
| Sequoiadendron giganteum | chr8 | 6 | CH_sgi_753 | 5 | 9 | 0.00000000266439 |
| Sequoiadendron giganteum | chr2 | 6 | CH_sgi_967 | 4 | 4 | 0.0000000256029 |
| Solanum lycopersicum | SL4.0ch11 | 6 | CH_sly_462 | 3 | 3 | 0.00000687296 |
| Selaginella moellendorffii | scaffold_10 | 6 | CH_smo_105 | 4 | 9 | 0.000000558702 |
| Solanum tuberosum | ST4.03ch01 | 6 | CH_stu_742 | 3 | 6 | 0.000204552 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 6 | CH_tpr_127 | 4 | 4 | 0.00000000130271 |
| Vaccinium macrocarpon | chr12_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_363 | 3 | 3 | 0.0000172273 |
| Vigna mungo | CM024071.1 | 6 | CH_vmu_262 | 3 | 3 | 0.00000964452 |
| Vitis vinifera | chr13 | 6 | CH_vvi_442 | 3 | 4 | 0.0000194323 |
| Zea mays | 2 | 6 | CH_zma_367 | 3 | 4 | 0.00011193 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |