Functional clusters

Information

  • Type InterPro
  • Description Embryo-specific ATS3

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_8 5 CH_aly_604 2 2 0.000396027
Arabidopsis thaliana Chr5 5 CH_ath_468 2 2 0.000171895
Brassica carinata ChrC06 5 CH_bca_2032 2 2 0.000769551
Brassica carinata ChrB07 5 CH_bca_2033 2 2 0.000769551
Brassica oleracea C2 5 CH_bol_894 2 2 0.000915212
Brassica rapa A02 5 CH_bra_570 2 2 0.00064397
Capsicum annuum PGAv.1.6.scaffold798 5 CH_can_846 2 2 0.000826105
Cardamine hirsuta Chr6 5 CH_chi_713 2 2 0.000414723
Citrullus lanatus CG_Chr05 5 CH_cla_111 3 3 0.000000236102
Capsella rubella scaffold_8 5 CH_cru_595 2 2 0.000438693
Cucumis sativus L. chr3 5 CH_csa_458 2 2 0.000500856
Eutrema salsugineum scaffold_6 5 CH_esa_521 2 2 0.000761499
Eutrema salsugineum scaffold_2 5 CH_esa_522 2 2 0.000761499
Lactuca sativa Lsat_1_v8_lg_4 5 CH_lsa_895 2 3 0.000925157
Magnolia biondii Chr14 5 CH_mbi_545 3 10 0.00000169777
Medicago truncatula chr2 5 CH_mtr_215 5 8 0.000000000000150781
Pisum sativum chr5LG3 5 CH_psa_59 7 40 0.00000000000000622907
Sequoiadendron giganteum HRSCAF_1 5 CH_sgi_127 8 9 3.04697e-25
Schrenkiella parvula ch6-6 5 CH_spa_367 2 2 0.00078734
Schrenkiella parvula ch2-4 5 CH_spa_368 2 2 0.00078734
Solanum pennellii Spenn-ch01 5 CH_spe_797 2 2 0.00044479
Solanum tuberosum ST4.03ch01 5 CH_stu_709 2 2 0.000153736
Tarenaya hassleriana NW_010966933.1 5 CH_tha_250 2 2 0.000209541
Trifolium pratense Tp57577_TGAC_v2_LG7 5 CH_tpr_15 7 8 3.91302e-20
Vitis vinifera chr16 5 CH_vvi_690 2 2 0.000456378
Arabidopsis lyrata scaffold_8 6 CH_aly_604 2 2 0.000396027
Arabidopsis thaliana Chr5 6 CH_ath_468 2 2 0.000171895
Brassica carinata ChrC06 6 CH_bca_2032 2 2 0.000769551
Brassica carinata ChrB07 6 CH_bca_2033 2 2 0.000769551
Brassica oleracea C2 6 CH_bol_894 2 2 0.000915212
Brassica rapa A02 6 CH_bra_570 2 2 0.00064397
Capsicum annuum PGAv.1.6.scaffold798 6 CH_can_846 2 2 0.000826105
Cardamine hirsuta Chr6 6 CH_chi_713 2 2 0.000414723
Citrullus lanatus CG_Chr05 6 CH_cla_111 3 3 0.000000236102
Cucumis melo chr06 6 CH_cme_163 3 3 0.000000133516
Capsella rubella scaffold_8 6 CH_cru_595 2 2 0.000438693
Cucumis sativus L. chr3 6 CH_csa_458 2 2 0.000500856
Eutrema salsugineum scaffold_6 6 CH_esa_521 2 2 0.000761499
Eutrema salsugineum scaffold_2 6 CH_esa_522 2 2 0.000761499
Lactuca sativa Lsat_1_v8_lg_4 6 CH_lsa_895 2 3 0.000925157
Magnolia biondii Chr14 6 CH_mbi_545 3 10 0.00000169777
Medicago truncatula chr2 6 CH_mtr_215 5 8 0.000000000000150781
Pisum sativum chr5LG3 6 CH_psa_59 7 40 0.00000000000000622907
Sequoiadendron giganteum HRSCAF_1 6 CH_sgi_127 8 9 3.04697e-25
Schrenkiella parvula ch6-6 6 CH_spa_367 2 2 0.00078734
Schrenkiella parvula ch2-4 6 CH_spa_368 2 2 0.00078734
Solanum pennellii Spenn-ch01 6 CH_spe_797 2 2 0.00044479
Solanum tuberosum ST4.03ch01 6 CH_stu_709 2 2 0.000153736
Tarenaya hassleriana NW_010966933.1 6 CH_tha_250 2 2 0.000209541
Trifolium pratense Tp57577_TGAC_v2_LG7 6 CH_tpr_15 7 8 3.91302e-20
Vitis vinifera chr16 6 CH_vvi_690 2 2 0.000456378

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001