Functional clusters

Information

  • Type InterPro
  • Description GAGA-binding transcriptional activator

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopoda AmTr_v1.0_scaffold00185 5 CH_atr_578 2 2 0.000476644
Chenopodium quinoa C_Quinoa_Scaffold_1257 5 CH_cqu_364 3 3 0.000000282885
Cucumis sativus L. chr5 5 CH_csa_457 2 2 0.000500856
Davidia involucrata GWHABJS00000822 5 CH_din_428 4 44 0.0000250335
Oryza sativa ssp. japonica chr10 5 CH_osa_271 3 4 0.000000167341
Populus trichocarpa Chr12 5 CH_ptr_396 3 3 0.00000143327
Populus trichocarpa Chr15 5 CH_ptr_397 3 3 0.00000143327
Phaseolus vulgaris Chr04 5 CH_pvu_679 2 2 0.000734727
Salvia bowleyana GWHASIU00000006 5 CH_sbo_765 2 3 0.00081892
Vitis vinifera chr18 5 CH_vvi_315 3 4 0.000000347115
Amborella trichopoda AmTr_v1.0_scaffold00185 6 CH_atr_578 2 2 0.000476644
Cucumis melo chr09 6 CH_cme_422 2 2 0.000400267
Chenopodium quinoa C_Quinoa_Scaffold_1257 6 CH_cqu_364 3 3 0.000000282885
Cucumis sativus L. chr5 6 CH_csa_457 2 2 0.000500856
Davidia involucrata GWHABJS00000822 6 CH_din_428 4 44 0.0000250335
Oryza sativa ssp. japonica chr10 6 CH_osa_271 3 4 0.000000167341
Populus trichocarpa Chr12 6 CH_ptr_396 3 3 0.00000143327
Populus trichocarpa Chr15 6 CH_ptr_397 3 3 0.00000143327
Phaseolus vulgaris Chr04 6 CH_pvu_679 2 2 0.000734727
Salvia bowleyana GWHASIU00000006 6 CH_sbo_765 2 3 0.00081892
Vitis vinifera chr18 6 CH_vvi_315 3 4 0.000000347115

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001