Functional clusters

Information

  • Type InterPro
  • Description Rhamnogalacturonate lyase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-6 5 CH_aar_145 4 9 0.0000000945934
Aethionema arabicum LG-1 5 CH_aar_222 3 4 0.00000823789
Acer truncatum chr13 5 CH_acertr_24 7 13 5.97133e-19
Arabidopsis lyrata scaffold_1 5 CH_aly_309 3 4 0.00000146363
Avicennia marina ScioBoG_4119_HRSCAF_4138 5 CH_ama_197 2 2 0.000517331
Amaranthus hybridus AmaHy_arrow1_Scaffold_5 5 CH_amhyb_55 4 10 0.000000000375696
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.08 5 CH_arhy_537 3 3 0.000000295785
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 5 CH_arhy_637 3 4 0.000001183
Brassica carinata ChrC05 5 CH_bca_782 3 4 0.00000124736
Brassica napus A08 5 CH_bna_337 4 7 0.00000000594353
Brassica napus A06 5 CH_bna_699 3 4 0.00000366052
Brassica napus C05 5 CH_bna_700 3 4 0.00000366052
Brassica oleracea C5 5 CH_bol_346 3 4 0.00000141011
Brassica rapa A06 5 CH_bra_217 3 4 0.00000132688
Camellia sinensis var. sinensis Contig936 5 CH_camsi_586 3 3 0.000000520419
Coffea canephora chr7 5 CH_ccan_22 5 27 0.00000000000001046
Carpinus fangiana Cfa05 5 CH_cfa_245 3 3 0.000000301137
Cardamine hirsuta Chr1 5 CH_chi_350 3 5 0.00000250765
Corchorus olitorius AWUE01022524.1 5 CH_col_22 5 7 0.00000000000114724
Carica papaya supercontig_177 5 CH_cpa_662 2 2 0.000950661
Chenopodium quinoa C_Quinoa_Scaffold_1566 5 CH_cqu_134 5 8 0.00000000000423615
Capsella rubella scaffold_1 5 CH_cru_320 3 4 0.00000179597
Cucumis sativus L. chr3 5 CH_csa_208 3 3 0.000000365847
Davidia involucrata GWHABJS00000021 5 CH_din_131 4 5 0.0000000000281464
Durio zibethinus NW_019167937.1 5 CH_dzi_92 4 4 0.0000000000376391
Erigeron canadensis Conyza_canadensis_scaffold:7 5 CH_eca_61 5 10 0.000000000000160887
Eucalyptus grandis Chr06 5 CH_egr_469 4 5 0.000000000105253
Erythranthe guttata scaffold_8 5 CH_egut_83 6 8 2.70814e-16
Eutrema salsugineum scaffold_5 5 CH_esa_188 3 3 0.000000304449
Fragaria vesca Fvb5 5 CH_fve_124 5 8 0.00000000000400451
Helianthus annuus HanXRQChr02 5 CH_han_177 5 11 0.000000000000973157
Lupinus albus Lalb_Chr05 5 CH_lal_116 4 5 0.00000000155017
Lupinus albus Lalb_Chr09 5 CH_lal_263 3 3 0.00000118167
Lotus japonicus chr4 5 CH_lja_225 3 3 0.000000429537
Lonicera japonica GWHAAZE00000004 5 CH_lonja_518 3 3 0.000000887686
Lactuca sativa Lsat_1_v8_lg_1 5 CH_lsa_209 4 8 0.000000000427695
Magnolia biondii Chr16 5 CH_mbi_282 3 3 0.00000000353808
Malus domestica Chr12 5 CH_mdo_855 3 7 0.0000512933
Marchantia polymorpha scaffold_26 5 CH_mpo_93 3 3 0.00000153697
Medicago truncatula chr8 5 CH_mtr_647 3 4 0.000000567153
Medicago truncatula chr3 5 CH_mtr_648 3 4 0.000000567153
Nelumbo nucifera chr5 5 CH_nnu_602 2 2 0.000722526
Nelumbo nucifera chr1 5 CH_nnu_603 2 2 0.000722526
Olea europaea chr10 5 CH_oeu_165 4 15 0.000000307651
Punica granatum NC_045130.1 5 CH_pgr_124 4 4 0.000000000159714
Punica granatum NC_045129.1 5 CH_pgr_464 3 13 0.000202484
Prunus persica Pp01 5 CH_ppe_192 5 19 0.0000000000566429
Pisum sativum chr2LG1 5 CH_psa_735 2 2 0.000782452
Papaver somniferum NC_039364.1 5 CH_pso_339 4 6 0.0000000030789
Populus trichocarpa Chr02 5 CH_ptr_172 4 4 0.0000000000405549
Quercus lobata 12 5 CH_qlo_310 5 6 0.000000000000017906
Rosa chinensis RcHm_v2.0_Chr7 5 CH_rch_129 7 14 1.23989e-17
Rhododendron simsii chr10 5 CH_rsi_147 5 5 0.0000000000000163901
Simmondsia chinensis GWHAASQ00000026 5 CH_sci_168 3 4 0.000000869828
Solanum lycopersicum SL4.0ch04 5 CH_sly_189 4 4 0.000000000433758
Schrenkiella parvula ch1-1 5 CH_spa_152 3 4 0.00000130164
Solanum pennellii Spenn-ch11 5 CH_spe_131 4 4 0.000000000130684
Selenicereus undatus Scaffold_33675 5 CH_sun_22 5 8 0.00000000000147497
Theobroma cacao Chromosome_8 5 CH_tca_78 5 5 0.000000000000001295
Tarenaya hassleriana NW_010965869.1 5 CH_tha_344 2 2 0.00069847
Tripterygium wilfordii NC_052242.1 5 CH_twi_76 4 4 0.000000000036392
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_702 2 2 0.000557543
Vigna mungo CM024074.1 5 CH_vmu_239 3 5 0.00000350602
Aethionema arabicum LG-6 6 CH_aar_145 4 9 0.0000000945934
Aethionema arabicum LG-1 6 CH_aar_222 3 4 0.00000823789
Acer truncatum chr13 6 CH_acertr_24 7 13 5.97133e-19
Arabidopsis lyrata scaffold_1 6 CH_aly_309 3 4 0.00000146363
Avicennia marina ScioBoG_4119_HRSCAF_4138 6 CH_ama_197 2 2 0.000517331
Amaranthus hybridus AmaHy_arrow1_Scaffold_5 6 CH_amhyb_55 4 10 0.000000000375696
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.08 6 CH_arhy_537 3 3 0.000000295785
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 6 CH_arhy_637 3 4 0.000001183
Brassica carinata ChrC05 6 CH_bca_782 3 4 0.00000124736
Brassica napus A08 6 CH_bna_337 4 7 0.00000000594353
Brassica napus A06 6 CH_bna_699 3 4 0.00000366052
Brassica napus C05 6 CH_bna_700 3 4 0.00000366052
Brassica oleracea C5 6 CH_bol_346 3 4 0.00000141011
Brassica rapa A06 6 CH_bra_217 3 4 0.00000132688
Camellia sinensis var. sinensis Contig936 6 CH_camsi_586 3 3 0.000000520419
Coffea canephora chr7 6 CH_ccan_22 5 27 0.00000000000001046
Carpinus fangiana Cfa05 6 CH_cfa_245 3 3 0.000000301137
Cardamine hirsuta Chr1 6 CH_chi_350 3 5 0.00000250765
Cucumis melo chr04 6 CH_cme_174 3 3 0.000000233653
Corchorus olitorius AWUE01022524.1 6 CH_col_22 5 7 0.00000000000114724
Carica papaya supercontig_177 6 CH_cpa_662 2 2 0.000950661
Chenopodium quinoa C_Quinoa_Scaffold_1566 6 CH_cqu_134 5 8 0.00000000000423615
Capsella rubella scaffold_1 6 CH_cru_320 3 4 0.00000179597
Cucumis sativus L. chr3 6 CH_csa_208 3 3 0.000000365847
Davidia involucrata GWHABJS00000021 6 CH_din_131 4 5 0.0000000000281464
Durio zibethinus NW_019167937.1 6 CH_dzi_92 4 4 0.0000000000376391
Erigeron canadensis Conyza_canadensis_scaffold:7 6 CH_eca_61 5 10 0.000000000000160887
Eucalyptus grandis Chr06 6 CH_egr_469 4 5 0.000000000105253
Erythranthe guttata scaffold_8 6 CH_egut_83 6 8 2.70814e-16
Eutrema salsugineum scaffold_5 6 CH_esa_188 3 3 0.000000304449
Fragaria vesca Fvb5 6 CH_fve_124 5 8 0.00000000000400451
Helianthus annuus HanXRQChr02 6 CH_han_177 5 11 0.000000000000973157
Lupinus albus Lalb_Chr05 6 CH_lal_116 4 5 0.00000000155017
Lupinus albus Lalb_Chr09 6 CH_lal_263 3 3 0.00000118167
Lotus japonicus chr4 6 CH_lja_225 3 3 0.000000429537
Lonicera japonica GWHAAZE00000004 6 CH_lonja_518 3 3 0.000000887686
Lactuca sativa Lsat_1_v8_lg_1 6 CH_lsa_209 4 8 0.000000000427695
Magnolia biondii Chr16 6 CH_mbi_282 3 3 0.00000000353808
Malus domestica Chr12 6 CH_mdo_855 3 7 0.0000512933
Marchantia polymorpha scaffold_26 6 CH_mpo_93 3 3 0.00000153697
Medicago truncatula chr8 6 CH_mtr_647 3 4 0.000000567153
Medicago truncatula chr3 6 CH_mtr_648 3 4 0.000000567153
Nelumbo nucifera chr5 6 CH_nnu_602 2 2 0.000722526
Nelumbo nucifera chr1 6 CH_nnu_603 2 2 0.000722526
Olea europaea chr10 6 CH_oeu_165 4 15 0.000000307651
Punica granatum NC_045130.1 6 CH_pgr_124 4 4 0.000000000159714
Punica granatum NC_045129.1 6 CH_pgr_464 3 13 0.000202484
Prunus persica Pp01 6 CH_ppe_192 5 19 0.0000000000566429
Pisum sativum chr2LG1 6 CH_psa_735 2 2 0.000782452
Papaver somniferum NC_039364.1 6 CH_pso_339 4 6 0.0000000030789
Populus trichocarpa Chr02 6 CH_ptr_172 4 4 0.0000000000405549
Quercus lobata 12 6 CH_qlo_310 5 6 0.000000000000017906
Rosa chinensis RcHm_v2.0_Chr7 6 CH_rch_129 7 14 1.23989e-17
Rhododendron simsii chr10 6 CH_rsi_147 5 5 0.0000000000000163901
Simmondsia chinensis GWHAASQ00000026 6 CH_sci_168 3 4 0.000000869828
Solanum lycopersicum SL4.0ch04 6 CH_sly_189 4 4 0.000000000433758
Schrenkiella parvula ch1-1 6 CH_spa_152 3 4 0.00000130164
Solanum pennellii Spenn-ch11 6 CH_spe_131 4 4 0.000000000130684
Selenicereus undatus Scaffold_33675 6 CH_sun_22 5 8 0.00000000000147497
Theobroma cacao Chromosome_8 6 CH_tca_78 5 5 0.000000000000001295
Tarenaya hassleriana NW_010965869.1 6 CH_tha_344 2 2 0.00069847
Tripterygium wilfordii NC_052242.1 6 CH_twi_76 4 4 0.000000000036392
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_702 2 2 0.000557543
Vigna mungo CM024074.1 6 CH_vmu_239 3 5 0.00000350602

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001