Functional clusters

Information

  • Type InterPro
  • Description Glutamate decarboxylase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Actinidia chinensis Lachesis_group16 5 CH_ach_579 2 2 0.000814819
Actinidia chinensis Lachesis_group11 5 CH_ach_580 2 2 0.000814819
Actinidia chinensis Lachesis_group26 5 CH_ach_581 2 2 0.000814819
Arabidopsis lyrata scaffold_5 5 CH_aly_662 2 2 0.000660044
Avicennia marina ScioBoG_102835_HRSCAF_103059 5 CH_ama_189 2 2 0.000517331
Aquilegia oxysepala CHR03 5 CH_aox_59 5 22 0.00000000000816695
Arabidopsis thaliana Chr2 5 CH_ath_544 2 2 0.000429738
Amborella trichopoda AmTr_v1.0_scaffold00024 5 CH_atr_127 4 13 0.00000000107511
Brassica carinata ChrB01 5 CH_bca_1157 3 6 0.0000242656
Brassica napus C03 5 CH_bna_1006 3 11 0.0000592137
Brassica napus C03 5 CH_bna_760 3 4 0.000006771
Brassica napus A03 5 CH_bna_942 3 8 0.0000338426
Brassica oleracea C3 5 CH_bol_431 3 6 0.00000916307
Beta vulgaris Chr6_EL10_PGA_scaffold0 5 CH_bvu_229 3 4 0.00000082246
Camellia sinensis var. sinensis Chr12 5 CH_camsi_1062 2 2 0.000137564
Cannabis sativa NC_044373.1 5 CH_cansat_282 3 7 0.00000226302
Coffea canephora chr7 5 CH_ccan_551 2 4 0.000255531
Ceratophyllum demersum 3 5 CH_cde_37 5 25 0.00000000194736
Cardamine hirsuta Chr5 5 CH_chi_767 2 2 0.000691204
Citrullus lanatus CG_Chr01 5 CH_cla_110 3 3 0.000000236102
Davidia involucrata GWHABJS00000018 5 CH_din_723 2 2 0.000500125
Glycine max Gm08 5 CH_gma_350 3 3 0.000000259319
Lupinus albus Lalb_Chr15 5 CH_lal_673 2 2 0.000524824
Magnolia biondii Chr19 5 CH_mbi_201 4 6 0.0000000000773179
Medicago truncatula chr5 5 CH_mtr_1270 2 2 0.000410863
Nelumbo nucifera chr4 5 CH_nnu_412 3 36 0.0000992613
Olea europaea chr7 5 CH_oeu_422 2 2 0.000160137
Prunus persica Pp03 5 CH_ppe_742 2 3 0.000447577
Papaver somniferum NC_039367.1 5 CH_pso_480 3 3 0.000000125626
Populus trichocarpa Chr04 5 CH_ptr_781 2 2 0.000867002
Phaseolus vulgaris Chr02 5 CH_pvu_265 3 3 0.000000283418
Quercus lobata 3 5 CH_qlo_1687 2 2 0.000516289
Rhododendron simsii chr09 5 CH_rsi_772 2 2 0.000193592
Salvia bowleyana GWHASIU00000006 5 CH_sbo_692 2 2 0.00045498
Salix brachista GWHAAZH00000004 5 CH_sbr_688 2 2 0.000945209
Sechium edule LG03 5 CH_sed_493 2 2 0.000713419
Sequoiadendron giganteum chr6 5 CH_sgi_390 5 6 0.0000000000000638672
Trifolium pratense Tp57577_TGAC_v2_LG4 5 CH_tpr_672 2 2 0.000454184
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_751 2 3 0.00083625
Vigna mungo CM024069.1 5 CH_vmu_289 3 8 0.0000294335
Vitis vinifera chr1 5 CH_vvi_584 2 2 0.000228189
Actinidia chinensis Lachesis_group16 6 CH_ach_579 2 2 0.000814819
Actinidia chinensis Lachesis_group11 6 CH_ach_580 2 2 0.000814819
Actinidia chinensis Lachesis_group26 6 CH_ach_581 2 2 0.000814819
Arabidopsis lyrata scaffold_5 6 CH_aly_662 2 2 0.000660044
Avicennia marina ScioBoG_102835_HRSCAF_103059 6 CH_ama_189 2 2 0.000517331
Aquilegia oxysepala CHR03 6 CH_aox_59 5 22 0.00000000000816695
Arabidopsis thaliana Chr2 6 CH_ath_544 2 2 0.000429738
Amborella trichopoda AmTr_v1.0_scaffold00024 6 CH_atr_127 4 13 0.00000000107511
Brassica carinata ChrB01 6 CH_bca_1157 3 6 0.0000242656
Brassica napus C03 6 CH_bna_1006 3 11 0.0000592137
Brassica napus C03 6 CH_bna_760 3 4 0.000006771
Brassica napus A03 6 CH_bna_942 3 8 0.0000338426
Brassica oleracea C3 6 CH_bol_431 3 6 0.00000916307
Beta vulgaris Chr6_EL10_PGA_scaffold0 6 CH_bvu_229 3 4 0.00000082246
Camellia sinensis var. sinensis Chr12 6 CH_camsi_1062 2 2 0.000137564
Cannabis sativa NC_044373.1 6 CH_cansat_282 3 7 0.00000226302
Coffea canephora chr7 6 CH_ccan_551 2 4 0.000255531
Ceratophyllum demersum 3 6 CH_cde_37 5 25 0.00000000194736
Cardamine hirsuta Chr5 6 CH_chi_767 2 2 0.000691204
Citrullus lanatus CG_Chr01 6 CH_cla_110 3 3 0.000000236102
Cucumis melo chr09 6 CH_cme_152 3 3 0.0000000667579
Davidia involucrata GWHABJS00000018 6 CH_din_723 2 2 0.000500125
Glycine max Gm08 6 CH_gma_350 3 3 0.000000259319
Lupinus albus Lalb_Chr15 6 CH_lal_673 2 2 0.000524824
Magnolia biondii Chr19 6 CH_mbi_201 4 6 0.0000000000773179
Medicago truncatula chr5 6 CH_mtr_1270 2 2 0.000410863
Nelumbo nucifera chr4 6 CH_nnu_412 3 36 0.0000992613
Olea europaea chr7 6 CH_oeu_422 2 2 0.000160137
Prunus persica Pp03 6 CH_ppe_742 2 3 0.000447577
Papaver somniferum NC_039367.1 6 CH_pso_480 3 3 0.000000125626
Populus trichocarpa Chr04 6 CH_ptr_781 2 2 0.000867002
Phaseolus vulgaris Chr02 6 CH_pvu_265 3 3 0.000000283418
Quercus lobata 3 6 CH_qlo_1687 2 2 0.000516289
Rhododendron simsii chr09 6 CH_rsi_772 2 2 0.000193592
Salvia bowleyana GWHASIU00000006 6 CH_sbo_692 2 2 0.00045498
Salix brachista GWHAAZH00000004 6 CH_sbr_688 2 2 0.000945209
Sechium edule LG03 6 CH_sed_493 2 2 0.000713419
Sequoiadendron giganteum chr6 6 CH_sgi_390 5 6 0.0000000000000638672
Trifolium pratense Tp57577_TGAC_v2_LG4 6 CH_tpr_672 2 2 0.000454184
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_751 2 3 0.00083625
Vigna mungo CM024069.1 6 CH_vmu_289 3 8 0.0000294335
Vitis vinifera chr1 6 CH_vvi_584 2 2 0.000228189

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001