Functional clusters

Information

  • Type InterPro
  • Description Methylmalonate-semialdehyde dehydrogenase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr6 5 CH_acertr_382 3 4 0.00000166964
Avicennia marina ScioBoG_26180_HRSCAF_26306 5 CH_ama_118 2 2 0.0000862218
Camellia sinensis var. sinensis Chr3 5 CH_camsi_1542 2 2 0.000962949
Camellia sinensis var. sinensis Chr1 5 CH_camsi_577 3 4 0.000000441527
Capsicum annuum PGAv.1.6.scaffold504 5 CH_can_312 3 3 0.000000204743
Corylus avellana 9 5 CH_cav_236 3 4 0.000000141073
Chara braunii BFEA01000319 5 CH_cbr_294 2 4 0.00043153
Coffea canephora chr7 5 CH_ccan_216 3 27 0.000000795718
Citrus clementina scaffold_8 5 CH_ccl_648 2 2 0.000246093
Carpinus fangiana Cfa02 5 CH_cfa_495 2 2 0.000227204
Corchorus olitorius AWUE01019532.1 5 CH_col_153 2 2 0.000292099
Chenopodium quinoa C_Quinoa_Scaffold_2587 5 CH_cqu_383 3 4 0.000000471431
Davidia involucrata GWHABJS00000005 5 CH_din_809 2 2 0.000750188
Davidia involucrata GWHABJS00000002 5 CH_din_810 2 2 0.000750188
Durio zibethinus NW_019168048.1 5 CH_dzi_485 2 2 0.000278093
Eucalyptus grandis Chr09 5 CH_egr_1066 2 2 0.0000585274
Erythranthe guttata scaffold_2 5 CH_egut_570 2 3 0.000218436
Fragaria vesca Fvb2 5 CH_fve_459 3 5 0.00000624462
Gossypium hirsutum A03 5 CH_ghi_1211 2 2 0.000560733
Gossypium hirsutum D02 5 CH_ghi_1212 2 2 0.000560733
Gossypium raimondii Chr05 5 CH_gra_508 2 2 0.000160832
Helianthus annuus HanXRQChr03 5 CH_han_988 2 2 0.000231857
Manihot esculenta Chromosome10 5 CH_mes_634 2 2 0.000366379
Nelumbo nucifera chr5 5 CH_nnu_505 2 2 0.00028901
Olea europaea chr15 5 CH_oeu_667 2 2 0.000800683
Punica granatum NC_045128.1 5 CH_pgr_506 2 2 0.000225107
Prunus persica Pp08 5 CH_ppe_805 2 3 0.000671324
Populus trichocarpa Chr09 5 CH_ptr_751 2 2 0.000578001
Quercus lobata 11 5 CH_qlo_1585 2 2 0.000309773
Rosa chinensis RcHm_v2.0_Chr6 5 CH_rch_398 4 11 0.000000000940543
Rhododendron simsii chr05 5 CH_rsi_967 2 2 0.000645307
Salvia bowleyana GWHASIU00000002 5 CH_sbo_609 3 46 0.000188223
Salix brachista GWHAAZH00000009 5 CH_sbr_536 2 2 0.000189042
Solanum tuberosum ST4.03ch01 5 CH_stu_593 2 2 0.0000512453
Selenicereus undatus Scaffold_33676 5 CH_sun_191 2 2 0.0000726639
Theobroma cacao Chromosome_2 5 CH_tca_617 2 2 0.000219716
Tarenaya hassleriana NW_010963495.1 5 CH_tha_226 2 3 0.000209534
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_797 2 2 0.000929238
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_798 2 2 0.000929238
Vitis vinifera chr3 5 CH_vvi_610 2 2 0.000228189
Acer truncatum chr6 6 CH_acertr_382 3 4 0.00000166964
Avicennia marina ScioBoG_26180_HRSCAF_26306 6 CH_ama_118 2 2 0.0000862218
Camellia sinensis var. sinensis Chr3 6 CH_camsi_1542 2 2 0.000962949
Camellia sinensis var. sinensis Chr1 6 CH_camsi_577 3 4 0.000000441527
Capsicum annuum PGAv.1.6.scaffold504 6 CH_can_312 3 3 0.000000204743
Corylus avellana 9 6 CH_cav_236 3 4 0.000000141073
Chara braunii BFEA01000319 6 CH_cbr_294 2 4 0.00043153
Coffea canephora chr7 6 CH_ccan_216 3 27 0.000000795718
Citrus clementina scaffold_8 6 CH_ccl_648 2 2 0.000246093
Carpinus fangiana Cfa02 6 CH_cfa_495 2 2 0.000227204
Corchorus olitorius AWUE01019532.1 6 CH_col_153 2 2 0.000292099
Chenopodium quinoa C_Quinoa_Scaffold_2587 6 CH_cqu_383 3 4 0.000000471431
Davidia involucrata GWHABJS00000005 6 CH_din_809 2 2 0.000750188
Davidia involucrata GWHABJS00000002 6 CH_din_810 2 2 0.000750188
Durio zibethinus NW_019168048.1 6 CH_dzi_485 2 2 0.000278093
Eucalyptus grandis Chr09 6 CH_egr_1066 2 2 0.0000585274
Erythranthe guttata scaffold_2 6 CH_egut_570 2 3 0.000218436
Fragaria x ananassa Fvb4-1 6 CH_fan_1249 2 2 0.000832663
Fragaria vesca Fvb2 6 CH_fve_459 3 5 0.00000624462
Gossypium hirsutum A03 6 CH_ghi_1211 2 2 0.000560733
Gossypium hirsutum D02 6 CH_ghi_1212 2 2 0.000560733
Gossypium raimondii Chr05 6 CH_gra_508 2 2 0.000160832
Helianthus annuus HanXRQChr03 6 CH_han_988 2 2 0.000231857
Manihot esculenta Chromosome10 6 CH_mes_634 2 2 0.000366379
Nelumbo nucifera chr5 6 CH_nnu_505 2 2 0.00028901
Olea europaea chr15 6 CH_oeu_667 2 2 0.000800683
Punica granatum NC_045128.1 6 CH_pgr_506 2 2 0.000225107
Prunus persica Pp08 6 CH_ppe_805 2 3 0.000671324
Populus trichocarpa Chr09 6 CH_ptr_751 2 2 0.000578001
Quercus lobata 11 6 CH_qlo_1585 2 2 0.000309773
Rosa chinensis RcHm_v2.0_Chr6 6 CH_rch_398 4 11 0.000000000940543
Rhododendron simsii chr05 6 CH_rsi_967 2 2 0.000645307
Salvia bowleyana GWHASIU00000002 6 CH_sbo_609 3 46 0.000188223
Salix brachista GWHAAZH00000009 6 CH_sbr_536 2 2 0.000189042
Solanum tuberosum ST4.03ch01 6 CH_stu_593 2 2 0.0000512453
Selenicereus undatus Scaffold_33676 6 CH_sun_191 2 2 0.0000726639
Theobroma cacao Chromosome_2 6 CH_tca_617 2 2 0.000219716
Tarenaya hassleriana NW_010963495.1 6 CH_tha_226 2 3 0.000209534
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_797 2 2 0.000929238
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_798 2 2 0.000929238
Vitis vinifera chr3 6 CH_vvi_610 2 2 0.000228189

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001