Functional clusters
Information
- Type InterPro
- Description Glycine-rich domain-containing protein-like
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_117 | 5 | CH_aag_133 | 3 | 4 | 0.0000021639 |
| Brassica carinata | ChrC08 | 5 | CH_bca_587 | 3 | 3 | 0.000000196034 |
| Brassica napus | C06 | 5 | CH_bna_465 | 3 | 3 | 0.000000147807 |
| Brassica oleracea | C6 | 5 | CH_bol_229 | 3 | 3 | 0.0000000560911 |
| Corylus avellana | 3 | 5 | CH_cav_732 | 2 | 2 | 0.000460017 |
| Ceratophyllum demersum | 2 | 5 | CH_cde_326 | 2 | 2 | 0.000236939 |
| Cardamine hirsuta | Chr7 | 5 | CH_chi_712 | 2 | 2 | 0.000414723 |
| Carya illinoinensis | Chr08 | 5 | CH_cil_813 | 2 | 2 | 0.000619828 |
| Citrullus lanatus | CG_Chr10 | 5 | CH_cla_346 | 2 | 2 | 0.000532269 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1566 | 5 | CH_cqu_1069 | 2 | 2 | 0.000995025 |
| Chlamydomonas reinhardtii | chromosome_11 | 5 | CH_cre_56 | 3 | 3 | 0.00000232848 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 5 | CH_eca_850 | 2 | 3 | 0.000807658 |
| Magnolia biondii | Chr16 | 5 | CH_mbi_373 | 3 | 4 | 0.0000000566069 |
| Punica granatum | NC_045129.1 | 5 | CH_pgr_318 | 3 | 8 | 0.00000472745 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 5 | CH_rch_1237 | 2 | 2 | 0.000239192 |
| Salvia bowleyana | GWHASIU00000006 | 5 | CH_sbo_402 | 3 | 16 | 0.00000695198 |
| Simmondsia chinensis | GWHAASQ00000026 | 5 | CH_sci_457 | 2 | 2 | 0.000510856 |
| Sequoiadendron giganteum | chr7 | 5 | CH_sgi_1053 | 3 | 3 | 0.0000000711967 |
| Sequoiadendron giganteum | chr2 | 5 | CH_sgi_2562 | 2 | 2 | 0.000730727 |
| Selenicereus undatus | Scaffold_33675 | 5 | CH_sun_387 | 2 | 2 | 0.000726639 |
| Vanilla planifolia | CM028154.1 | 5 | CH_vpl_354 | 3 | 23 | 0.0000579391 |
| Anthoceros agrestis | Sc2ySwM_117 | 6 | CH_aag_133 | 3 | 4 | 0.0000021639 |
| Brassica carinata | ChrC08 | 6 | CH_bca_587 | 3 | 3 | 0.000000196034 |
| Brassica napus | C06 | 6 | CH_bna_465 | 3 | 3 | 0.000000147807 |
| Brassica oleracea | C6 | 6 | CH_bol_229 | 3 | 3 | 0.0000000560911 |
| Corylus avellana | 3 | 6 | CH_cav_732 | 2 | 2 | 0.000460017 |
| Ceratophyllum demersum | 2 | 6 | CH_cde_326 | 2 | 2 | 0.000236939 |
| Cardamine hirsuta | Chr7 | 6 | CH_chi_712 | 2 | 2 | 0.000414723 |
| Carya illinoinensis | Chr08 | 6 | CH_cil_813 | 2 | 2 | 0.000619828 |
| Citrullus lanatus | CG_Chr10 | 6 | CH_cla_346 | 2 | 2 | 0.000532269 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1566 | 6 | CH_cqu_1069 | 2 | 2 | 0.000995025 |
| Chlamydomonas reinhardtii | chromosome_11 | 6 | CH_cre_56 | 3 | 3 | 0.00000232848 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 6 | CH_eca_850 | 2 | 3 | 0.000807658 |
| Magnolia biondii | Chr16 | 6 | CH_mbi_373 | 3 | 4 | 0.0000000566069 |
| Punica granatum | NC_045129.1 | 6 | CH_pgr_318 | 3 | 8 | 0.00000472745 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 6 | CH_rch_1237 | 2 | 2 | 0.000239192 |
| Salvia bowleyana | GWHASIU00000006 | 6 | CH_sbo_402 | 3 | 16 | 0.00000695198 |
| Simmondsia chinensis | GWHAASQ00000026 | 6 | CH_sci_457 | 2 | 2 | 0.000510856 |
| Sequoiadendron giganteum | chr7 | 6 | CH_sgi_1053 | 3 | 3 | 0.0000000711967 |
| Sequoiadendron giganteum | chr2 | 6 | CH_sgi_2562 | 2 | 2 | 0.000730727 |
| Selenicereus undatus | Scaffold_33675 | 6 | CH_sun_387 | 2 | 2 | 0.000726639 |
| Vanilla planifolia | CM028154.1 | 6 | CH_vpl_354 | 3 | 23 | 0.0000579391 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |