Functional clusters

Information

  • Type InterPro
  • Description Root cap

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_117 5 CH_aag_105 4 6 0.000000246881
Anthoceros agrestis Sc2ySwM_368 5 CH_aag_135 6 77 0.00000228225
Aethionema arabicum LG-3 5 CH_aar_443 2 2 0.000912326
Arabidopsis lyrata scaffold_8 5 CH_aly_727 2 2 0.000990066
Aquilegia oxysepala CHR04 5 CH_aox_118 4 9 0.0000000245462
Arabidopsis thaliana Chr5 5 CH_ath_560 2 3 0.000429738
Amborella trichopoda AmTr_v1.0_scaffold00040 5 CH_atr_247 3 3 0.000000530131
Beta vulgaris Chr9_EL10_PGA_scaffold8 5 CH_bvu_194 3 3 0.000000205643
Cannabis sativa NC_044375.1 5 CH_cansat_222 3 3 0.000000226376
Coffea canephora chr8 5 CH_ccan_602 2 7 0.000383294
Citrus clementina scaffold_8 5 CH_ccl_715 2 2 0.000492187
Citrus clementina scaffold_1 5 CH_ccl_716 2 2 0.000492187
Carpinus fangiana Cfa08 5 CH_cfa_554 2 2 0.000454408
Citrullus lanatus CG_Chr01 5 CH_cla_312 3 28 0.000385664
Corchorus olitorius AWUE01021135.1 5 CH_col_70 3 3 0.000000512005
Carica papaya supercontig_216 5 CH_cpa_323 2 2 0.0000950661
Chenopodium quinoa C_Quinoa_Scaffold_2771 5 CH_cqu_499 3 3 0.00000447901
Chenopodium quinoa C_Quinoa_Scaffold_2193 5 CH_cqu_585 3 4 0.0000179099
Daucus carota DCARv2_Chr4 5 CH_dca_278 3 3 0.00000174505
Erigeron canadensis Conyza_canadensis_scaffold:3 5 CH_eca_382 3 4 0.00000265744
Erigeron canadensis Conyza_canadensis_scaffold:1 5 CH_eca_457 3 6 0.0000132826
Fragaria vesca Fvb3 5 CH_fve_347 3 3 0.000000291523
Gossypium hirsutum D01 5 CH_ghi_514 3 3 0.00000030587
Gossypium hirsutum A01 5 CH_ghi_586 3 4 0.00000122334
Gossypium raimondii Chr02 5 CH_gra_252 3 3 0.000000150895
Helianthus annuus HanXRQChr16 5 CH_han_70 8 22 3.14439e-19
Lonicera japonica GWHAAZE00000001 5 CH_lonja_472 3 3 0.000000301275
Lactuca sativa Lsat_1_v8_lg_7 5 CH_lsa_224 4 4 0.000000000969701
Lactuca sativa Lsat_1_v8_lg_7 5 CH_lsa_280 4 6 0.000000014537
Lactuca sativa Lsat_1_v8_lg_4 5 CH_lsa_465 3 3 0.00000269494
Lactuca sativa Lsat_1_v8_lg_6 5 CH_lsa_523 3 4 0.0000107766
Magnolia biondii Chr07 5 CH_mbi_1217 2 2 0.000728491
Malus domestica Chr11 5 CH_mdo_598 3 4 0.00000142347
Malus domestica Chr03 5 CH_mdo_657 3 5 0.00000355821
Manihot esculenta Chromosome15 5 CH_mes_324 3 3 0.000000469831
Medicago truncatula chr2 5 CH_mtr_589 3 3 0.000000212703
Olea europaea chr5 5 CH_oeu_620 2 2 0.000533789
Oryza sativa ssp. japonica chr01 5 CH_osa_781 2 3 0.000950562
Petunia axillaris Peaxi162Scf00152 5 CH_pax_245 3 4 0.000000593943
Physcomitrium patens Chr23 5 CH_ppa_21 4 7 0.000000000362257
Prunus persica Pp06 5 CH_ppe_272 4 6 0.00000000616186
Prunus persica Pp06 5 CH_ppe_411 3 3 0.00000137729
Pisum sativum chr5LG3 5 CH_psa_679 2 2 0.000521635
Papaver somniferum NC_039360.1 5 CH_pso_614 3 3 0.00000197956
Populus trichocarpa Chr09 5 CH_ptr_797 2 2 0.000867002
Phaseolus vulgaris Chr11 5 CH_pvu_274 3 4 0.000000323876
Rosa chinensis RcHm_v2.0_Chr5 5 CH_rch_725 3 5 0.00000133473
Rosa chinensis RcHm_v2.0_Chr5 5 CH_rch_726 3 5 0.00000133473
Rhododendron simsii chr13 5 CH_rsi_123 7 14 3.789e-16
Rhododendron simsii chr06 5 CH_rsi_535 3 3 0.00000424763
Salvia bowleyana GWHASIU00000006 5 CH_sbo_573 2 2 0.000136494
Salix brachista GWHAAZH00000011 5 CH_sbr_271 3 3 0.000000333554
Sequoiadendron giganteum chr8 5 CH_sgi_287 7 14 7.01605e-17
Sequoiadendron giganteum chr8 5 CH_sgi_545 5 7 0.00000000000548678
Trochodendron aralioides group2 5 CH_tar_361 3 5 0.00000189191
Theobroma cacao Chromosome_7 5 CH_tca_403 3 5 0.00000281532
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_292 3 3 0.00000213722
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_334 3 4 0.00000854611
Vitis vinifera chrUn 5 CH_vvi_326 3 3 0.000000486007
Zea mays 3 5 CH_zma_200 3 3 0.000000470605
Anthoceros agrestis Sc2ySwM_117 6 CH_aag_105 4 6 0.000000246881
Anthoceros agrestis Sc2ySwM_368 6 CH_aag_135 6 77 0.00000228225
Aethionema arabicum LG-3 6 CH_aar_443 2 2 0.000912326
Arabidopsis lyrata scaffold_8 6 CH_aly_727 2 2 0.000990066
Aquilegia oxysepala CHR04 6 CH_aox_118 4 9 0.0000000245462
Arabidopsis thaliana Chr5 6 CH_ath_560 2 3 0.000429738
Amborella trichopoda AmTr_v1.0_scaffold00040 6 CH_atr_247 3 3 0.000000530131
Beta vulgaris Chr9_EL10_PGA_scaffold8 6 CH_bvu_194 3 3 0.000000205643
Cannabis sativa NC_044375.1 6 CH_cansat_222 3 3 0.000000226376
Coffea canephora chr8 6 CH_ccan_602 2 7 0.000383294
Citrus clementina scaffold_8 6 CH_ccl_715 2 2 0.000492187
Citrus clementina scaffold_1 6 CH_ccl_716 2 2 0.000492187
Carpinus fangiana Cfa08 6 CH_cfa_554 2 2 0.000454408
Citrullus lanatus CG_Chr01 6 CH_cla_312 3 28 0.000385664
Corchorus olitorius AWUE01021135.1 6 CH_col_70 3 3 0.000000512005
Carica papaya supercontig_216 6 CH_cpa_323 2 2 0.0000950661
Chenopodium quinoa C_Quinoa_Scaffold_2771 6 CH_cqu_499 3 3 0.00000447901
Chenopodium quinoa C_Quinoa_Scaffold_2193 6 CH_cqu_585 3 4 0.0000179099
Daucus carota DCARv2_Chr4 6 CH_dca_278 3 3 0.00000174505
Erigeron canadensis Conyza_canadensis_scaffold:3 6 CH_eca_382 3 4 0.00000265744
Erigeron canadensis Conyza_canadensis_scaffold:1 6 CH_eca_457 3 6 0.0000132826
Fragaria x ananassa Fvb3-4 6 CH_fan_432 3 3 0.000000909551
Fragaria x ananassa Fvb3-2 6 CH_fan_542 3 4 0.00000363766
Fragaria vesca Fvb3 6 CH_fve_347 3 3 0.000000291523
Gossypium hirsutum D01 6 CH_ghi_514 3 3 0.00000030587
Gossypium hirsutum A01 6 CH_ghi_586 3 4 0.00000122334
Gossypium raimondii Chr02 6 CH_gra_252 3 3 0.000000150895
Helianthus annuus HanXRQChr16 6 CH_han_70 8 22 3.14439e-19
Lonicera japonica GWHAAZE00000001 6 CH_lonja_472 3 3 0.000000301275
Lactuca sativa Lsat_1_v8_lg_7 6 CH_lsa_224 4 4 0.000000000969701
Lactuca sativa Lsat_1_v8_lg_7 6 CH_lsa_280 4 6 0.000000014537
Lactuca sativa Lsat_1_v8_lg_4 6 CH_lsa_465 3 3 0.00000269494
Lactuca sativa Lsat_1_v8_lg_6 6 CH_lsa_523 3 4 0.0000107766
Magnolia biondii Chr07 6 CH_mbi_1217 2 2 0.000728491
Malus domestica Chr11 6 CH_mdo_598 3 4 0.00000142347
Malus domestica Chr03 6 CH_mdo_657 3 5 0.00000355821
Manihot esculenta Chromosome15 6 CH_mes_324 3 3 0.000000469831
Medicago truncatula chr2 6 CH_mtr_589 3 3 0.000000212703
Olea europaea chr5 6 CH_oeu_620 2 2 0.000533789
Oryza sativa ssp. japonica chr01 6 CH_osa_781 2 3 0.000950562
Petunia axillaris Peaxi162Scf00152 6 CH_pax_245 3 4 0.000000593943
Physcomitrium patens Chr23 6 CH_ppa_21 4 7 0.000000000362257
Prunus persica Pp06 6 CH_ppe_272 4 6 0.00000000616186
Prunus persica Pp06 6 CH_ppe_411 3 3 0.00000137729
Pisum sativum chr5LG3 6 CH_psa_679 2 2 0.000521635
Papaver somniferum NC_039360.1 6 CH_pso_614 3 3 0.00000197956
Populus trichocarpa Chr09 6 CH_ptr_797 2 2 0.000867002
Phaseolus vulgaris Chr11 6 CH_pvu_274 3 4 0.000000323876
Rosa chinensis RcHm_v2.0_Chr5 6 CH_rch_725 3 5 0.00000133473
Rosa chinensis RcHm_v2.0_Chr5 6 CH_rch_726 3 5 0.00000133473
Rhododendron simsii chr13 6 CH_rsi_123 7 14 3.789e-16
Rhododendron simsii chr06 6 CH_rsi_535 3 3 0.00000424763
Salvia bowleyana GWHASIU00000006 6 CH_sbo_573 2 2 0.000136494
Salix brachista GWHAAZH00000011 6 CH_sbr_271 3 3 0.000000333554
Sequoiadendron giganteum chr8 6 CH_sgi_287 7 14 7.01605e-17
Sequoiadendron giganteum chr8 6 CH_sgi_545 5 7 0.00000000000548678
Trochodendron aralioides group2 6 CH_tar_361 3 5 0.00000189191
Theobroma cacao Chromosome_7 6 CH_tca_403 3 5 0.00000281532
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_292 3 3 0.00000213722
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_334 3 4 0.00000854611
Vitis vinifera chrUn 6 CH_vvi_326 3 3 0.000000486007
Zea mays 3 6 CH_zma_200 3 3 0.000000470605

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001