Functional clusters
Information
- Type InterPro
- Description Domain of unknown function DUF1216
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-2 | 5 | CH_aar_39 | 6 | 7 | 2.78825e-17 |
| Arabidopsis lyrata | scaffold_5 | 5 | CH_aly_48 | 6 | 9 | 0.00000000000000109367 |
| Arabidopsis thaliana | Chr3 | 5 | CH_ath_47 | 7 | 32 | 0.00000000000000378273 |
| Brassica carinata | ChrC03 | 5 | CH_bca_1011 | 3 | 5 | 0.00000781166 |
| Brassica carinata | ChrB07 | 5 | CH_bca_234 | 4 | 4 | 0.000000000141982 |
| Brassica napus | C02 | 5 | CH_bna_1027 | 4 | 58 | 0.000071497 |
| Brassica napus | A02 | 5 | CH_bna_575 | 3 | 3 | 0.000000915266 |
| Brassica oleracea | C2 | 5 | CH_bol_191 | 4 | 10 | 0.0000000108829 |
| Brassica rapa | A02 | 5 | CH_bra_294 | 4 | 42 | 0.0000130738 |
| Cardamine hirsuta | Chr5 | 5 | CH_chi_273 | 4 | 31 | 0.000000155616 |
| Capsella rubella | scaffold_5 | 5 | CH_cru_21 | 7 | 7 | 4.33357e-22 |
| Eutrema salsugineum | scaffold_6 | 5 | CH_esa_99 | 4 | 5 | 0.0000000000993566 |
| Schrenkiella parvula | ch2-4 | 5 | CH_spa_24 | 5 | 5 | 0.0000000000000363231 |
| Tarenaya hassleriana | NW_010966881.1 | 5 | CH_tha_23 | 5 | 5 | 0.000000000000044993 |
| Tarenaya hassleriana | NW_010961290.1 | 5 | CH_tha_276 | 3 | 14 | 0.000318891 |
| Aethionema arabicum | LG-2 | 6 | CH_aar_39 | 6 | 7 | 2.78825e-17 |
| Arabidopsis lyrata | scaffold_5 | 6 | CH_aly_48 | 6 | 9 | 0.00000000000000109367 |
| Arabidopsis thaliana | Chr3 | 6 | CH_ath_47 | 7 | 32 | 0.00000000000000378273 |
| Brassica carinata | ChrC03 | 6 | CH_bca_1011 | 3 | 5 | 0.00000781166 |
| Brassica carinata | ChrB07 | 6 | CH_bca_234 | 4 | 4 | 0.000000000141982 |
| Brassica napus | C02 | 6 | CH_bna_1027 | 4 | 58 | 0.000071497 |
| Brassica napus | A02 | 6 | CH_bna_575 | 3 | 3 | 0.000000915266 |
| Brassica oleracea | C2 | 6 | CH_bol_191 | 4 | 10 | 0.0000000108829 |
| Brassica rapa | A02 | 6 | CH_bra_294 | 4 | 42 | 0.0000130738 |
| Cardamine hirsuta | Chr5 | 6 | CH_chi_273 | 4 | 31 | 0.000000155616 |
| Capsella rubella | scaffold_5 | 6 | CH_cru_21 | 7 | 7 | 4.33357e-22 |
| Eutrema salsugineum | scaffold_6 | 6 | CH_esa_99 | 4 | 5 | 0.0000000000993566 |
| Schrenkiella parvula | ch2-4 | 6 | CH_spa_24 | 5 | 5 | 0.0000000000000363231 |
| Tarenaya hassleriana | NW_010966881.1 | 6 | CH_tha_23 | 5 | 5 | 0.000000000000044993 |
| Tarenaya hassleriana | NW_010961290.1 | 6 | CH_tha_276 | 3 | 14 | 0.000318891 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |