Functional clusters

Information

  • Type InterPro
  • Description Histone-fold

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-5 5 CH_aar_224 4 5 0.00000871127
Acer truncatum chr3 5 CH_acertr_683 6 54 0.000143454
Actinidia chinensis Lachesis_group9 5 CH_ach_289 4 7 0.0000710668
Capsicum annuum PGAv.1.6.scaffold65 5 CH_can_508 5 14 0.0000393974
Capsicum annuum PGAv.1.6.scaffold352 5 CH_can_533 4 6 0.0000802844
Carya illinoinensis Chr14 5 CH_cil_835 4 10 0.000648644
Carya illinoinensis Chr13 5 CH_cil_873 4 12 0.000970814
Citrullus lanatus CG_Chr02 5 CH_cla_163 4 6 0.0000123636
Chlamydomonas reinhardtii chromosome_17 5 CH_cre_10 14 66 0.000000000000620194
Chlamydomonas reinhardtii chromosome_17 5 CH_cre_14 14 74 0.00000000000347834
Chlamydomonas reinhardtii chromosome_6 5 CH_cre_2 25 66 5.31319e-33
Chlamydomonas reinhardtii chromosome_6 5 CH_cre_4 24 79 8.85033e-29
Chlamydomonas reinhardtii chromosome_12 5 CH_cre_5 16 39 1.5449e-20
Chlamydomonas reinhardtii chromosome_13 5 CH_cre_92 4 4 0.0000485983
Capsella rubella scaffold_5 5 CH_cru_414 7 71 0.0000436852
Daucus carota DCARv2_Chr2 5 CH_dca_46 9 17 0.0000000000000160046
Durio zibethinus NW_019167882.1 5 CH_dzi_391 4 6 0.0000491007
Erigeron canadensis Conyza_canadensis_scaffold:3 5 CH_eca_700 5 29 0.000273843
Eutrema salsugineum scaffold_2 5 CH_esa_375 4 8 0.000168764
Fragaria vesca Fvb3 5 CH_fve_68 11 39 5.78321e-16
Gossypium hirsutum A08 5 CH_ghi_399 8 33 0.0000000141915
Gossypium hirsutum D08 5 CH_ghi_551 7 30 0.00000064033
Gossypium hirsutum A01 5 CH_ghi_805 4 5 0.0000467265
Gossypium raimondii Chr04 5 CH_gra_206 8 33 0.00000000610523
Hydrangea macrophylla Hma1.2p1_0035F.1 5 CH_hma_258 4 8 0.0000605037
Lactuca sativa Lsat_1_v8_lg_8 5 CH_lsa_346 8 39 0.000000102461
Magnolia biondii Chr05 5 CH_mbi_821 5 20 0.0000918536
Micromonas commoda Chr_05 5 CH_mco_1 6 6 0.00000000000504144
Nicotiana tabacum Nitab4.5_0000610 5 CH_nta_143 5 16 0.00000885495
Oryza sativa ssp. japonica chr05 5 CH_osa_533 6 48 0.0000905083
Petunia axillaris Peaxi162Scf00406 5 CH_pax_722 4 12 0.00072536
Physcomitrium patens Chr06 5 CH_ppa_99 4 5 0.0000073132
Papaver somniferum NC_039367.1 5 CH_pso_324 9 44 0.00000000160143
Papaver somniferum NC_039361.1 5 CH_pso_347 9 49 0.00000000457702
Quercus lobata 1 5 CH_qlo_1856 4 14 0.0009913
Rosa chinensis RcHm_v2.0_Chr5 5 CH_rch_187 12 62 0.0000000000000108654
Rhododendron simsii chr13 5 CH_rsi_305 6 10 0.00000000373518
Rhododendron simsii chr01 5 CH_rsi_634 5 17 0.0000384726
Sechium edule LG01 5 CH_sed_299 4 6 0.0000434559
Sechium edule LG05 5 CH_sed_83 6 7 0.000000000193578
Sequoiadendron giganteum chr4 5 CH_sgi_1178 5 8 0.000000315287
Tarenaya hassleriana NW_010967707.1 5 CH_tha_284 4 9 0.000404845
Trifolium pratense Tp57577_TGAC_v2_LG6 5 CH_tpr_279 5 8 0.00000145208
Tripterygium wilfordii NC_052238.1 5 CH_twi_483 4 10 0.000514788
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_285 5 12 0.0000020003
Vanilla planifolia CM028158.1 5 CH_vpl_470 6 44 0.000129295
Aethionema arabicum LG-5 6 CH_aar_224 4 5 0.00000871127
Acer truncatum chr3 6 CH_acertr_683 6 54 0.000143454
Actinidia chinensis Lachesis_group9 6 CH_ach_289 4 7 0.0000710668
Capsicum annuum PGAv.1.6.scaffold65 6 CH_can_508 5 14 0.0000393974
Capsicum annuum PGAv.1.6.scaffold352 6 CH_can_533 4 6 0.0000802844
Carya illinoinensis Chr14 6 CH_cil_835 4 10 0.000648644
Carya illinoinensis Chr13 6 CH_cil_873 4 12 0.000970814
Citrullus lanatus CG_Chr02 6 CH_cla_163 4 6 0.0000123636
Chlamydomonas reinhardtii chromosome_17 6 CH_cre_10 14 66 0.000000000000620194
Chlamydomonas reinhardtii chromosome_17 6 CH_cre_14 14 74 0.00000000000347834
Chlamydomonas reinhardtii chromosome_6 6 CH_cre_2 25 66 5.31319e-33
Chlamydomonas reinhardtii chromosome_6 6 CH_cre_4 24 79 8.85033e-29
Chlamydomonas reinhardtii chromosome_12 6 CH_cre_5 16 39 1.5449e-20
Chlamydomonas reinhardtii chromosome_13 6 CH_cre_92 4 4 0.0000485983
Capsella rubella scaffold_5 6 CH_cru_414 7 71 0.0000436852
Daucus carota DCARv2_Chr2 6 CH_dca_46 9 17 0.0000000000000160046
Durio zibethinus NW_019167882.1 6 CH_dzi_391 4 6 0.0000491007
Erigeron canadensis Conyza_canadensis_scaffold:3 6 CH_eca_700 5 29 0.000273843
Eutrema salsugineum scaffold_2 6 CH_esa_375 4 8 0.000168764
Fragaria x ananassa Fvb3-2 6 CH_fan_154 8 23 0.0000000000485332
Fragaria x ananassa Fvb3-4 6 CH_fan_184 8 28 0.00000000030449
Fragaria x ananassa Fvb3-3 6 CH_fan_37 11 25 5.40348e-18
Fragaria x ananassa Fvb3-1 6 CH_fan_511 7 47 0.00000254811
Fragaria vesca Fvb3 6 CH_fve_68 11 39 5.78321e-16
Gossypium hirsutum A08 6 CH_ghi_399 8 33 0.0000000141915
Gossypium hirsutum D08 6 CH_ghi_551 7 30 0.00000064033
Gossypium hirsutum A01 6 CH_ghi_805 4 5 0.0000467265
Gossypium raimondii Chr04 6 CH_gra_206 8 33 0.00000000610523
Hydrangea macrophylla Hma1.2p1_0035F.1 6 CH_hma_258 4 8 0.0000605037
Lactuca sativa Lsat_1_v8_lg_8 6 CH_lsa_346 8 39 0.000000102461
Magnolia biondii Chr05 6 CH_mbi_821 5 20 0.0000918536
Micromonas commoda Chr_05 6 CH_mco_1 6 6 0.00000000000504144
Nicotiana tabacum Nitab4.5_0000610 6 CH_nta_143 5 16 0.00000885495
Oryza sativa ssp. japonica chr05 6 CH_osa_533 6 48 0.0000905083
Petunia axillaris Peaxi162Scf00406 6 CH_pax_722 4 12 0.00072536
Physcomitrium patens Chr06 6 CH_ppa_99 4 5 0.0000073132
Papaver somniferum NC_039367.1 6 CH_pso_324 9 44 0.00000000160143
Papaver somniferum NC_039361.1 6 CH_pso_347 9 49 0.00000000457702
Quercus lobata 1 6 CH_qlo_1856 4 14 0.0009913
Rosa chinensis RcHm_v2.0_Chr5 6 CH_rch_187 12 62 0.0000000000000108654
Rhododendron simsii chr13 6 CH_rsi_305 6 10 0.00000000373518
Rhododendron simsii chr01 6 CH_rsi_634 5 17 0.0000384726
Sechium edule LG01 6 CH_sed_299 4 6 0.0000434559
Sechium edule LG05 6 CH_sed_83 6 7 0.000000000193578
Sequoiadendron giganteum chr4 6 CH_sgi_1178 5 8 0.000000315287
Tarenaya hassleriana NW_010967707.1 6 CH_tha_284 4 9 0.000404845
Trifolium pratense Tp57577_TGAC_v2_LG6 6 CH_tpr_279 5 8 0.00000145208
Tripterygium wilfordii NC_052238.1 6 CH_twi_483 4 10 0.000514788
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_285 5 12 0.0000020003
Vanilla planifolia CM028158.1 6 CH_vpl_470 6 44 0.000129295

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001