Functional clusters
Information
- Type InterPro
- Description Histone-fold
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-5 | 5 | CH_aar_224 | 4 | 5 | 0.00000871127 |
| Acer truncatum | chr3 | 5 | CH_acertr_683 | 6 | 54 | 0.000143454 |
| Actinidia chinensis | Lachesis_group9 | 5 | CH_ach_289 | 4 | 7 | 0.0000710668 |
| Capsicum annuum | PGAv.1.6.scaffold65 | 5 | CH_can_508 | 5 | 14 | 0.0000393974 |
| Capsicum annuum | PGAv.1.6.scaffold352 | 5 | CH_can_533 | 4 | 6 | 0.0000802844 |
| Carya illinoinensis | Chr14 | 5 | CH_cil_835 | 4 | 10 | 0.000648644 |
| Carya illinoinensis | Chr13 | 5 | CH_cil_873 | 4 | 12 | 0.000970814 |
| Citrullus lanatus | CG_Chr02 | 5 | CH_cla_163 | 4 | 6 | 0.0000123636 |
| Chlamydomonas reinhardtii | chromosome_17 | 5 | CH_cre_10 | 14 | 66 | 0.000000000000620194 |
| Chlamydomonas reinhardtii | chromosome_17 | 5 | CH_cre_14 | 14 | 74 | 0.00000000000347834 |
| Chlamydomonas reinhardtii | chromosome_6 | 5 | CH_cre_2 | 25 | 66 | 5.31319e-33 |
| Chlamydomonas reinhardtii | chromosome_6 | 5 | CH_cre_4 | 24 | 79 | 8.85033e-29 |
| Chlamydomonas reinhardtii | chromosome_12 | 5 | CH_cre_5 | 16 | 39 | 1.5449e-20 |
| Chlamydomonas reinhardtii | chromosome_13 | 5 | CH_cre_92 | 4 | 4 | 0.0000485983 |
| Capsella rubella | scaffold_5 | 5 | CH_cru_414 | 7 | 71 | 0.0000436852 |
| Daucus carota | DCARv2_Chr2 | 5 | CH_dca_46 | 9 | 17 | 0.0000000000000160046 |
| Durio zibethinus | NW_019167882.1 | 5 | CH_dzi_391 | 4 | 6 | 0.0000491007 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 5 | CH_eca_700 | 5 | 29 | 0.000273843 |
| Eutrema salsugineum | scaffold_2 | 5 | CH_esa_375 | 4 | 8 | 0.000168764 |
| Fragaria vesca | Fvb3 | 5 | CH_fve_68 | 11 | 39 | 5.78321e-16 |
| Gossypium hirsutum | A08 | 5 | CH_ghi_399 | 8 | 33 | 0.0000000141915 |
| Gossypium hirsutum | D08 | 5 | CH_ghi_551 | 7 | 30 | 0.00000064033 |
| Gossypium hirsutum | A01 | 5 | CH_ghi_805 | 4 | 5 | 0.0000467265 |
| Gossypium raimondii | Chr04 | 5 | CH_gra_206 | 8 | 33 | 0.00000000610523 |
| Hydrangea macrophylla | Hma1.2p1_0035F.1 | 5 | CH_hma_258 | 4 | 8 | 0.0000605037 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 5 | CH_lsa_346 | 8 | 39 | 0.000000102461 |
| Magnolia biondii | Chr05 | 5 | CH_mbi_821 | 5 | 20 | 0.0000918536 |
| Micromonas commoda | Chr_05 | 5 | CH_mco_1 | 6 | 6 | 0.00000000000504144 |
| Nicotiana tabacum | Nitab4.5_0000610 | 5 | CH_nta_143 | 5 | 16 | 0.00000885495 |
| Oryza sativa ssp. japonica | chr05 | 5 | CH_osa_533 | 6 | 48 | 0.0000905083 |
| Petunia axillaris | Peaxi162Scf00406 | 5 | CH_pax_722 | 4 | 12 | 0.00072536 |
| Physcomitrium patens | Chr06 | 5 | CH_ppa_99 | 4 | 5 | 0.0000073132 |
| Papaver somniferum | NC_039367.1 | 5 | CH_pso_324 | 9 | 44 | 0.00000000160143 |
| Papaver somniferum | NC_039361.1 | 5 | CH_pso_347 | 9 | 49 | 0.00000000457702 |
| Quercus lobata | 1 | 5 | CH_qlo_1856 | 4 | 14 | 0.0009913 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_187 | 12 | 62 | 0.0000000000000108654 |
| Rhododendron simsii | chr13 | 5 | CH_rsi_305 | 6 | 10 | 0.00000000373518 |
| Rhododendron simsii | chr01 | 5 | CH_rsi_634 | 5 | 17 | 0.0000384726 |
| Sechium edule | LG01 | 5 | CH_sed_299 | 4 | 6 | 0.0000434559 |
| Sechium edule | LG05 | 5 | CH_sed_83 | 6 | 7 | 0.000000000193578 |
| Sequoiadendron giganteum | chr4 | 5 | CH_sgi_1178 | 5 | 8 | 0.000000315287 |
| Tarenaya hassleriana | NW_010967707.1 | 5 | CH_tha_284 | 4 | 9 | 0.000404845 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 5 | CH_tpr_279 | 5 | 8 | 0.00000145208 |
| Tripterygium wilfordii | NC_052238.1 | 5 | CH_twi_483 | 4 | 10 | 0.000514788 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_285 | 5 | 12 | 0.0000020003 |
| Vanilla planifolia | CM028158.1 | 5 | CH_vpl_470 | 6 | 44 | 0.000129295 |
| Aethionema arabicum | LG-5 | 6 | CH_aar_224 | 4 | 5 | 0.00000871127 |
| Acer truncatum | chr3 | 6 | CH_acertr_683 | 6 | 54 | 0.000143454 |
| Actinidia chinensis | Lachesis_group9 | 6 | CH_ach_289 | 4 | 7 | 0.0000710668 |
| Capsicum annuum | PGAv.1.6.scaffold65 | 6 | CH_can_508 | 5 | 14 | 0.0000393974 |
| Capsicum annuum | PGAv.1.6.scaffold352 | 6 | CH_can_533 | 4 | 6 | 0.0000802844 |
| Carya illinoinensis | Chr14 | 6 | CH_cil_835 | 4 | 10 | 0.000648644 |
| Carya illinoinensis | Chr13 | 6 | CH_cil_873 | 4 | 12 | 0.000970814 |
| Citrullus lanatus | CG_Chr02 | 6 | CH_cla_163 | 4 | 6 | 0.0000123636 |
| Chlamydomonas reinhardtii | chromosome_17 | 6 | CH_cre_10 | 14 | 66 | 0.000000000000620194 |
| Chlamydomonas reinhardtii | chromosome_17 | 6 | CH_cre_14 | 14 | 74 | 0.00000000000347834 |
| Chlamydomonas reinhardtii | chromosome_6 | 6 | CH_cre_2 | 25 | 66 | 5.31319e-33 |
| Chlamydomonas reinhardtii | chromosome_6 | 6 | CH_cre_4 | 24 | 79 | 8.85033e-29 |
| Chlamydomonas reinhardtii | chromosome_12 | 6 | CH_cre_5 | 16 | 39 | 1.5449e-20 |
| Chlamydomonas reinhardtii | chromosome_13 | 6 | CH_cre_92 | 4 | 4 | 0.0000485983 |
| Capsella rubella | scaffold_5 | 6 | CH_cru_414 | 7 | 71 | 0.0000436852 |
| Daucus carota | DCARv2_Chr2 | 6 | CH_dca_46 | 9 | 17 | 0.0000000000000160046 |
| Durio zibethinus | NW_019167882.1 | 6 | CH_dzi_391 | 4 | 6 | 0.0000491007 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 6 | CH_eca_700 | 5 | 29 | 0.000273843 |
| Eutrema salsugineum | scaffold_2 | 6 | CH_esa_375 | 4 | 8 | 0.000168764 |
| Fragaria x ananassa | Fvb3-2 | 6 | CH_fan_154 | 8 | 23 | 0.0000000000485332 |
| Fragaria x ananassa | Fvb3-4 | 6 | CH_fan_184 | 8 | 28 | 0.00000000030449 |
| Fragaria x ananassa | Fvb3-3 | 6 | CH_fan_37 | 11 | 25 | 5.40348e-18 |
| Fragaria x ananassa | Fvb3-1 | 6 | CH_fan_511 | 7 | 47 | 0.00000254811 |
| Fragaria vesca | Fvb3 | 6 | CH_fve_68 | 11 | 39 | 5.78321e-16 |
| Gossypium hirsutum | A08 | 6 | CH_ghi_399 | 8 | 33 | 0.0000000141915 |
| Gossypium hirsutum | D08 | 6 | CH_ghi_551 | 7 | 30 | 0.00000064033 |
| Gossypium hirsutum | A01 | 6 | CH_ghi_805 | 4 | 5 | 0.0000467265 |
| Gossypium raimondii | Chr04 | 6 | CH_gra_206 | 8 | 33 | 0.00000000610523 |
| Hydrangea macrophylla | Hma1.2p1_0035F.1 | 6 | CH_hma_258 | 4 | 8 | 0.0000605037 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 6 | CH_lsa_346 | 8 | 39 | 0.000000102461 |
| Magnolia biondii | Chr05 | 6 | CH_mbi_821 | 5 | 20 | 0.0000918536 |
| Micromonas commoda | Chr_05 | 6 | CH_mco_1 | 6 | 6 | 0.00000000000504144 |
| Nicotiana tabacum | Nitab4.5_0000610 | 6 | CH_nta_143 | 5 | 16 | 0.00000885495 |
| Oryza sativa ssp. japonica | chr05 | 6 | CH_osa_533 | 6 | 48 | 0.0000905083 |
| Petunia axillaris | Peaxi162Scf00406 | 6 | CH_pax_722 | 4 | 12 | 0.00072536 |
| Physcomitrium patens | Chr06 | 6 | CH_ppa_99 | 4 | 5 | 0.0000073132 |
| Papaver somniferum | NC_039367.1 | 6 | CH_pso_324 | 9 | 44 | 0.00000000160143 |
| Papaver somniferum | NC_039361.1 | 6 | CH_pso_347 | 9 | 49 | 0.00000000457702 |
| Quercus lobata | 1 | 6 | CH_qlo_1856 | 4 | 14 | 0.0009913 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_187 | 12 | 62 | 0.0000000000000108654 |
| Rhododendron simsii | chr13 | 6 | CH_rsi_305 | 6 | 10 | 0.00000000373518 |
| Rhododendron simsii | chr01 | 6 | CH_rsi_634 | 5 | 17 | 0.0000384726 |
| Sechium edule | LG01 | 6 | CH_sed_299 | 4 | 6 | 0.0000434559 |
| Sechium edule | LG05 | 6 | CH_sed_83 | 6 | 7 | 0.000000000193578 |
| Sequoiadendron giganteum | chr4 | 6 | CH_sgi_1178 | 5 | 8 | 0.000000315287 |
| Tarenaya hassleriana | NW_010967707.1 | 6 | CH_tha_284 | 4 | 9 | 0.000404845 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 6 | CH_tpr_279 | 5 | 8 | 0.00000145208 |
| Tripterygium wilfordii | NC_052238.1 | 6 | CH_twi_483 | 4 | 10 | 0.000514788 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_285 | 5 | 12 | 0.0000020003 |
| Vanilla planifolia | CM028158.1 | 6 | CH_vpl_470 | 6 | 44 | 0.000129295 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |