Functional clusters
Information
- Type InterPro
- Description TRAF-like
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.12 | 5 | CH_arhy_24 | 15 | 20 | 3.2517e-37 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.02 | 5 | CH_arhy_52 | 12 | 19 | 1.79052e-27 |
| Brassica napus | A03 | 5 | CH_bna_197 | 6 | 7 | 0.0000000000666973 |
| Brassica oleracea | C4 | 5 | CH_bol_443 | 4 | 7 | 0.0000108327 |
| Brassica oleracea | C6 | 5 | CH_bol_750 | 3 | 5 | 0.000395691 |
| Camellia sinensis var. sinensis | Chr1 | 5 | CH_camsi_159 | 7 | 16 | 0.00000000000012809 |
| Cardamine hirsuta | Chr5 | 5 | CH_chi_11 | 16 | 26 | 3.39673e-30 |
| Cardamine hirsuta | Chr3 | 5 | CH_chi_815 | 3 | 3 | 0.000870647 |
| Citrullus lanatus | CG_Chr01 | 5 | CH_cla_365 | 4 | 43 | 0.000774493 |
| Corchorus olitorius | AWUE01021101.1 | 5 | CH_col_15 | 7 | 13 | 0.0000000000000276501 |
| Carica papaya | supercontig_223 | 5 | CH_cpa_205 | 4 | 10 | 0.00000209051 |
| Erythranthe guttata | scaffold_15 | 5 | CH_egut_2 | 30 | 33 | 2.5629e-63 |
| Fragaria vesca | Fvb4 | 5 | CH_fve_59 | 9 | 21 | 5.29699e-17 |
| Gossypium hirsutum | A10 | 5 | CH_ghi_363 | 6 | 17 | 0.00000000266604 |
| Gossypium hirsutum | D10 | 5 | CH_ghi_93 | 9 | 10 | 3.18007e-21 |
| Gossypium raimondii | Chr11 | 5 | CH_gra_162 | 6 | 14 | 0.000000000209763 |
| Lotus japonicus | chr6 | 5 | CH_lja_154 | 4 | 4 | 0.00000003945 |
| Malus domestica | Chr13 | 5 | CH_mdo_19 | 15 | 38 | 5.82102e-28 |
| Prunus persica | Pp07 | 5 | CH_ppe_533 | 4 | 10 | 0.0000237433 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 5 | CH_tpr_31 | 7 | 7 | 9.9688e-17 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 5 | CH_tpr_58 | 6 | 7 | 0.000000000000635016 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.12 | 6 | CH_arhy_24 | 15 | 20 | 3.2517e-37 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.02 | 6 | CH_arhy_52 | 12 | 19 | 1.79052e-27 |
| Brassica napus | A03 | 6 | CH_bna_197 | 6 | 7 | 0.0000000000666973 |
| Brassica oleracea | C4 | 6 | CH_bol_443 | 4 | 7 | 0.0000108327 |
| Brassica oleracea | C6 | 6 | CH_bol_750 | 3 | 5 | 0.000395691 |
| Camellia sinensis var. sinensis | Chr1 | 6 | CH_camsi_159 | 7 | 16 | 0.00000000000012809 |
| Cardamine hirsuta | Chr5 | 6 | CH_chi_11 | 16 | 26 | 3.39673e-30 |
| Cardamine hirsuta | Chr3 | 6 | CH_chi_815 | 3 | 3 | 0.000870647 |
| Citrullus lanatus | CG_Chr01 | 6 | CH_cla_365 | 4 | 43 | 0.000774493 |
| Corchorus olitorius | AWUE01021101.1 | 6 | CH_col_15 | 7 | 13 | 0.0000000000000276501 |
| Carica papaya | supercontig_223 | 6 | CH_cpa_205 | 4 | 10 | 0.00000209051 |
| Erythranthe guttata | scaffold_15 | 6 | CH_egut_2 | 30 | 33 | 2.5629e-63 |
| Fragaria x ananassa | Fvb7-4 | 6 | CH_fan_1207 | 3 | 4 | 0.000786716 |
| Fragaria x ananassa | Fvb7-2 | 6 | CH_fan_27 | 12 | 55 | 2.56564e-19 |
| Fragaria x ananassa | Fvb7-1 | 6 | CH_fan_426 | 5 | 15 | 0.000000840209 |
| Fragaria vesca | Fvb4 | 6 | CH_fve_59 | 9 | 21 | 5.29699e-17 |
| Gossypium hirsutum | A10 | 6 | CH_ghi_363 | 6 | 17 | 0.00000000266604 |
| Gossypium hirsutum | D10 | 6 | CH_ghi_93 | 9 | 10 | 3.18007e-21 |
| Gossypium raimondii | Chr11 | 6 | CH_gra_162 | 6 | 14 | 0.000000000209763 |
| Lotus japonicus | chr6 | 6 | CH_lja_154 | 4 | 4 | 0.00000003945 |
| Malus domestica | Chr13 | 6 | CH_mdo_19 | 15 | 38 | 5.82102e-28 |
| Prunus persica | Pp07 | 6 | CH_ppe_533 | 4 | 10 | 0.0000237433 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 6 | CH_tpr_31 | 7 | 7 | 9.9688e-17 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 6 | CH_tpr_58 | 6 | 7 | 0.000000000000635016 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |