Functional clusters
Information
- Type InterPro
- Description Cupredoxin
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_344 | 5 | CH_aag_10 | 12 | 27 | 9.39897e-21 |
| Acer truncatum | chr5 | 5 | CH_acertr_42 | 10 | 17 | 3.94529e-16 |
| Camellia sinensis var. sinensis | Chr4 | 5 | CH_camsi_1118 | 4 | 7 | 0.000149642 |
| Capsicum annuum | PGAv.1.6.scaffold322 | 5 | CH_can_285 | 5 | 6 | 0.0000000685708 |
| Corylus avellana | 1 | 5 | CH_cav_79 | 8 | 10 | 0.000000000000211053 |
| Citrus clementina | scaffold_8 | 5 | CH_ccl_265 | 5 | 5 | 0.0000000255744 |
| Carpinus fangiana | Cfa02 | 5 | CH_cfa_49 | 10 | 14 | 6.65616e-17 |
| Cardamine hirsuta | Chr5 | 5 | CH_chi_204 | 5 | 5 | 0.0000000128914 |
| Carya illinoinensis | Chr16 | 5 | CH_cil_606 | 4 | 5 | 0.0000781118 |
| Eucalyptus grandis | Chr09 | 5 | CH_egr_480 | 9 | 26 | 0.00000000013418 |
| Eucalyptus grandis | Chr06 | 5 | CH_egr_985 | 4 | 4 | 0.0000192595 |
| Malus domestica | Chr04 | 5 | CH_mdo_555 | 5 | 7 | 0.000000633642 |
| Medicago truncatula | chr4 | 5 | CH_mtr_522 | 5 | 6 | 0.0000000533509 |
| Punica granatum | NC_045130.1 | 5 | CH_pgr_463 | 4 | 6 | 0.000195035 |
| Quercus lobata | 11 | 5 | CH_qlo_962 | 6 | 15 | 0.00000127028 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_675 | 5 | 7 | 0.000000605573 |
| Salix brachista | GWHAAZH00000016 | 5 | CH_sbr_565 | 4 | 7 | 0.000221226 |
| Schrenkiella parvula | ch3-5 | 5 | CH_spa_352 | 3 | 3 | 0.000735349 |
| Solanum tuberosum | ST4.03ch10 | 5 | CH_stu_966 | 3 | 3 | 0.000998434 |
| Tarenaya hassleriana | NW_010965373.1 | 5 | CH_tha_216 | 7 | 69 | 0.000151893 |
| Tripterygium wilfordii | NC_052238.1 | 5 | CH_twi_285 | 4 | 4 | 0.00000844009 |
| Vitis vinifera | chr3 | 5 | CH_vvi_260 | 5 | 5 | 0.0000000542564 |
| Vitis vinifera | chr18_random | 5 | CH_vvi_83 | 14 | 56 | 1.44672e-16 |
| Anthoceros agrestis | Sc2ySwM_344 | 6 | CH_aag_10 | 12 | 27 | 9.39897e-21 |
| Acer truncatum | chr5 | 6 | CH_acertr_42 | 10 | 17 | 3.94529e-16 |
| Camellia sinensis var. sinensis | Chr4 | 6 | CH_camsi_1118 | 4 | 7 | 0.000149642 |
| Capsicum annuum | PGAv.1.6.scaffold322 | 6 | CH_can_285 | 5 | 6 | 0.0000000685708 |
| Corylus avellana | 1 | 6 | CH_cav_79 | 8 | 10 | 0.000000000000211053 |
| Citrus clementina | scaffold_8 | 6 | CH_ccl_265 | 5 | 5 | 0.0000000255744 |
| Carpinus fangiana | Cfa02 | 6 | CH_cfa_49 | 10 | 14 | 6.65616e-17 |
| Cardamine hirsuta | Chr5 | 6 | CH_chi_204 | 5 | 5 | 0.0000000128914 |
| Carya illinoinensis | Chr16 | 6 | CH_cil_606 | 4 | 5 | 0.0000781118 |
| Cucumis melo | chr01 | 6 | CH_cme_131 | 5 | 5 | 0.00000000690933 |
| Eucalyptus grandis | Chr09 | 6 | CH_egr_480 | 9 | 26 | 0.00000000013418 |
| Eucalyptus grandis | Chr06 | 6 | CH_egr_985 | 4 | 4 | 0.0000192595 |
| Malus domestica | Chr04 | 6 | CH_mdo_555 | 5 | 7 | 0.000000633642 |
| Medicago truncatula | chr4 | 6 | CH_mtr_522 | 5 | 6 | 0.0000000533509 |
| Punica granatum | NC_045130.1 | 6 | CH_pgr_463 | 4 | 6 | 0.000195035 |
| Quercus lobata | 11 | 6 | CH_qlo_962 | 6 | 15 | 0.00000127028 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_675 | 5 | 7 | 0.000000605573 |
| Salix brachista | GWHAAZH00000016 | 6 | CH_sbr_565 | 4 | 7 | 0.000221226 |
| Schrenkiella parvula | ch3-5 | 6 | CH_spa_352 | 3 | 3 | 0.000735349 |
| Solanum tuberosum | ST4.03ch10 | 6 | CH_stu_966 | 3 | 3 | 0.000998434 |
| Tarenaya hassleriana | NW_010965373.1 | 6 | CH_tha_216 | 7 | 69 | 0.000151893 |
| Tripterygium wilfordii | NC_052238.1 | 6 | CH_twi_285 | 4 | 4 | 0.00000844009 |
| Vitis vinifera | chr3 | 6 | CH_vvi_260 | 5 | 5 | 0.0000000542564 |
| Vitis vinifera | chr18_random | 6 | CH_vvi_83 | 14 | 56 | 1.44672e-16 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |