Functional clusters
Information
- Type InterPro
- Description Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr12 | 5 | CH_acertr_673 | 4 | 14 | 0.000105416 |
| Actinidia chinensis | Lachesis_group10 | 5 | CH_ach_490 | 3 | 5 | 0.000403906 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.10 | 5 | CH_arhy_721 | 4 | 5 | 0.00000598448 |
| Amborella trichopoda | AmTr_v1.0_scaffold00003 | 5 | CH_atr_180 | 4 | 4 | 0.0000000263985 |
| Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 5 | CH_bvu_189 | 4 | 5 | 0.000000202027 |
| Capsicum annuum | PGAv.1.6.scaffold135 | 5 | CH_can_482 | 5 | 18 | 0.0000260182 |
| Coffea canephora | chr0 | 5 | CH_ccan_236 | 4 | 20 | 0.00000195965 |
| Carpinus fangiana | Cfa06 | 5 | CH_cfa_92 | 8 | 21 | 0.000000000000283262 |
| Eucalyptus grandis | Chr11 | 5 | CH_egr_485 | 6 | 7 | 0.000000000163764 |
| Lupinus albus | Lalb_Chr20 | 5 | CH_lal_337 | 3 | 3 | 0.00000836259 |
| Lonicera japonica | GWHAAZE00000003 | 5 | CH_lonja_462 | 8 | 56 | 0.000000204338 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 5 | CH_lsa_625 | 5 | 27 | 0.0000614538 |
| Magnolia biondii | Chr18 | 5 | CH_mbi_17 | 19 | 79 | 3.01578e-29 |
| Magnolia biondii | Chr18 | 5 | CH_mbi_551 | 5 | 12 | 0.00000179114 |
| Punica granatum | NC_045128.1 | 5 | CH_pgr_240 | 4 | 4 | 0.000000316766 |
| Quercus lobata | 8 | 5 | CH_qlo_1158 | 7 | 56 | 0.0000255742 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_1011 | 5 | 5 | 0.0000000369075 |
| Sequoiadendron giganteum | chr7 | 5 | CH_sgi_144 | 14 | 24 | 9.70585e-24 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_456 | 7 | 7 | 0.000000000000536416 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_546 | 8 | 14 | 0.00000000000596099 |
| Acer truncatum | chr12 | 6 | CH_acertr_673 | 4 | 14 | 0.000105416 |
| Actinidia chinensis | Lachesis_group10 | 6 | CH_ach_490 | 3 | 5 | 0.000403906 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.10 | 6 | CH_arhy_721 | 4 | 5 | 0.00000598448 |
| Amborella trichopoda | AmTr_v1.0_scaffold00003 | 6 | CH_atr_180 | 4 | 4 | 0.0000000263985 |
| Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 6 | CH_bvu_189 | 4 | 5 | 0.000000202027 |
| Capsicum annuum | PGAv.1.6.scaffold135 | 6 | CH_can_482 | 5 | 18 | 0.0000260182 |
| Coffea canephora | chr0 | 6 | CH_ccan_236 | 4 | 20 | 0.00000195965 |
| Carpinus fangiana | Cfa06 | 6 | CH_cfa_92 | 8 | 21 | 0.000000000000283262 |
| Eucalyptus grandis | Chr11 | 6 | CH_egr_485 | 6 | 7 | 0.000000000163764 |
| Fragaria x ananassa | Fvb2-1 | 6 | CH_fan_400 | 4 | 4 | 0.000000512497 |
| Fragaria x ananassa | Fvb6-1 | 6 | CH_fan_999 | 4 | 13 | 0.000362591 |
| Lupinus albus | Lalb_Chr20 | 6 | CH_lal_337 | 3 | 3 | 0.00000836259 |
| Lonicera japonica | GWHAAZE00000003 | 6 | CH_lonja_462 | 8 | 56 | 0.000000204338 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 6 | CH_lsa_625 | 5 | 27 | 0.0000614538 |
| Magnolia biondii | Chr18 | 6 | CH_mbi_17 | 19 | 79 | 3.01578e-29 |
| Magnolia biondii | Chr18 | 6 | CH_mbi_551 | 5 | 12 | 0.00000179114 |
| Punica granatum | NC_045128.1 | 6 | CH_pgr_240 | 4 | 4 | 0.000000316766 |
| Quercus lobata | 8 | 6 | CH_qlo_1158 | 7 | 56 | 0.0000255742 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_1011 | 5 | 5 | 0.0000000369075 |
| Sequoiadendron giganteum | chr7 | 6 | CH_sgi_144 | 14 | 24 | 9.70585e-24 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_456 | 7 | 7 | 0.000000000000536416 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_546 | 8 | 14 | 0.00000000000596099 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |