Functional clusters
Information
- Type InterPro
- Description Protein TIC214
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica napus | C02 | 5 | CH_bna_443 | 3 | 3 | 0.0000000852732 |
| Brassica oleracea | Boleracea_scaffold_35 | 5 | CH_bol_252 | 5 | 26 | 0.000000112501 |
| Brassica oleracea | Boleracea_scaffold_29 | 5 | CH_bol_400 | 5 | 53 | 0.00000485726 |
| Brassica oleracea | C2 | 5 | CH_bol_459 | 4 | 19 | 0.0000145193 |
| Brassica rapa | Brapa_scaffold_59 | 5 | CH_bra_187 | 5 | 52 | 0.000000405269 |
| Citrullus lanatus | CG_Chr11 | 5 | CH_cla_39 | 4 | 4 | 0.0000000000733139 |
| Cucumis sativus L. | chr1 | 5 | CH_csa_405 | 2 | 2 | 0.000250428 |
| Erythranthe guttata | scaffold_4 | 5 | CH_egut_300 | 3 | 3 | 0.000000278364 |
| Helianthus annuus | HanXRQChr15 | 5 | CH_han_190 | 6 | 12 | 0.00000000000197897 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 5 | CH_lsa_821 | 2 | 2 | 0.000514007 |
| Magnolia biondii | Chr08 | 5 | CH_mbi_537 | 3 | 6 | 0.0000014149 |
| Nelumbo nucifera | scaffold029 | 5 | CH_nnu_52 | 5 | 5 | 0.0000000000000519698 |
| Nicotiana tabacum | Nitab4.5_0000172 | 5 | CH_nta_320 | 2 | 2 | 0.000658364 |
| Petunia axillaris | Peaxi162Scf00080 | 5 | CH_pax_48 | 6 | 15 | 0.000000000000332498 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 5 | CH_rch_1323 | 2 | 2 | 0.000398653 |
| Solanum lycopersicum | SL4.0ch02 | 5 | CH_sly_120 | 6 | 6 | 0.000000000000127695 |
| Solanum lycopersicum | SL4.0ch11 | 5 | CH_sly_194 | 5 | 6 | 0.000000000651948 |
| Solanum lycopersicum | SL4.0ch11 | 5 | CH_sly_640 | 3 | 3 | 0.0000733288 |
| Solanum lycopersicum | SL4.0ch00 | 5 | CH_sly_761 | 5 | 50 | 0.000220231 |
| Vanilla planifolia | JADCNL010000483.1 | 5 | CH_vpl_246 | 3 | 16 | 0.00000458389 |
| Brassica napus | C02 | 6 | CH_bna_443 | 3 | 3 | 0.0000000852732 |
| Brassica oleracea | Boleracea_scaffold_35 | 6 | CH_bol_252 | 5 | 26 | 0.000000112501 |
| Brassica oleracea | Boleracea_scaffold_29 | 6 | CH_bol_400 | 5 | 53 | 0.00000485726 |
| Brassica oleracea | C2 | 6 | CH_bol_459 | 4 | 19 | 0.0000145193 |
| Brassica rapa | Brapa_scaffold_59 | 6 | CH_bra_187 | 5 | 52 | 0.000000405269 |
| Citrullus lanatus | CG_Chr11 | 6 | CH_cla_39 | 4 | 4 | 0.0000000000733139 |
| Cucumis sativus L. | chr1 | 6 | CH_csa_405 | 2 | 2 | 0.000250428 |
| Erythranthe guttata | scaffold_4 | 6 | CH_egut_300 | 3 | 3 | 0.000000278364 |
| Helianthus annuus | HanXRQChr15 | 6 | CH_han_190 | 6 | 12 | 0.00000000000197897 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 6 | CH_lsa_821 | 2 | 2 | 0.000514007 |
| Magnolia biondii | Chr08 | 6 | CH_mbi_537 | 3 | 6 | 0.0000014149 |
| Nelumbo nucifera | scaffold029 | 6 | CH_nnu_52 | 5 | 5 | 0.0000000000000519698 |
| Nicotiana tabacum | Nitab4.5_0000172 | 6 | CH_nta_320 | 2 | 2 | 0.000658364 |
| Petunia axillaris | Peaxi162Scf00080 | 6 | CH_pax_48 | 6 | 15 | 0.000000000000332498 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 6 | CH_rch_1323 | 2 | 2 | 0.000398653 |
| Solanum lycopersicum | SL4.0ch02 | 6 | CH_sly_120 | 6 | 6 | 0.000000000000127695 |
| Solanum lycopersicum | SL4.0ch11 | 6 | CH_sly_194 | 5 | 6 | 0.000000000651948 |
| Solanum lycopersicum | SL4.0ch11 | 6 | CH_sly_640 | 3 | 3 | 0.0000733288 |
| Solanum lycopersicum | SL4.0ch00 | 6 | CH_sly_761 | 5 | 50 | 0.000220231 |
| Vanilla planifolia | JADCNL010000483.1 | 6 | CH_vpl_246 | 3 | 16 | 0.00000458389 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |