Functional clusters
Information
- Type InterPro
- Description Powdery mildew resistance protein, RPW8 domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica rapa | A09 | 5 | CH_bra_223 | 3 | 3 | 0.00000154824 |
| Cicer arietinum L. | Ca_LG4_v3 | 5 | CH_car_354 | 2 | 2 | 0.000466981 |
| Coffea canephora | chr7 | 5 | CH_ccan_372 | 2 | 7 | 0.0000425888 |
| Carya illinoinensis | Chr02 | 5 | CH_cil_632 | 3 | 7 | 0.000164341 |
| Corchorus olitorius | AWUE01014688.1 | 5 | CH_col_93 | 3 | 5 | 0.00000511743 |
| Durio zibethinus | NW_019167960.1 | 5 | CH_dzi_208 | 3 | 4 | 0.000000257773 |
| Fragaria vesca | Fvb1 | 5 | CH_fve_4 | 23 | 51 | 6.20919e-47 |
| Fragaria vesca | Fvb5 | 5 | CH_fve_43 | 10 | 17 | 1.25516e-19 |
| Fragaria vesca | Fvb5 | 5 | CH_fve_452 | 4 | 6 | 0.00000511825 |
| Fragaria vesca | Fvb2 | 5 | CH_fve_663 | 3 | 3 | 0.000196882 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 5 | CH_lsa_267 | 6 | 73 | 0.00000000677732 |
| Malus domestica | Chr06 | 5 | CH_mdo_1372 | 3 | 9 | 0.000733868 |
| Manihot esculenta | Chromosome12 | 5 | CH_mes_162 | 4 | 4 | 0.0000000000102468 |
| Nelumbo nucifera | chr5 | 5 | CH_nnu_205 | 3 | 4 | 0.000000139207 |
| Punica granatum | NC_045127.1 | 5 | CH_pgr_293 | 3 | 4 | 0.00000189153 |
| Pisum sativum | chr6LG2 | 5 | CH_psa_237 | 3 | 3 | 0.000000142858 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 5 | CH_rch_798 | 4 | 8 | 0.00000388369 |
| Sechium edule | LG14 | 5 | CH_sed_224 | 3 | 5 | 0.00000267141 |
| Theobroma cacao | Chromosome_1 | 5 | CH_tca_582 | 2 | 3 | 0.000219708 |
| Tripterygium wilfordii | NC_052242.1 | 5 | CH_twi_497 | 2 | 2 | 0.000557507 |
| Vitis vinifera | chrUn | 5 | CH_vvi_370 | 3 | 3 | 0.00000143198 |
| Brassica rapa | A09 | 6 | CH_bra_223 | 3 | 3 | 0.00000154824 |
| Cicer arietinum L. | Ca_LG4_v3 | 6 | CH_car_354 | 2 | 2 | 0.000466981 |
| Coffea canephora | chr7 | 6 | CH_ccan_372 | 2 | 7 | 0.0000425888 |
| Carya illinoinensis | Chr02 | 6 | CH_cil_632 | 3 | 7 | 0.000164341 |
| Cucumis melo | chr08 | 6 | CH_cme_154 | 3 | 3 | 0.0000000667579 |
| Corchorus olitorius | AWUE01014688.1 | 6 | CH_col_93 | 3 | 5 | 0.00000511743 |
| Durio zibethinus | NW_019167960.1 | 6 | CH_dzi_208 | 3 | 4 | 0.000000257773 |
| Fragaria x ananassa | Fvb1-4 | 6 | CH_fan_103 | 8 | 25 | 0.000000000000457929 |
| Fragaria x ananassa | Fvb5-3 | 6 | CH_fan_1202 | 3 | 4 | 0.000768976 |
| Fragaria x ananassa | Fvb5-2 | 6 | CH_fan_5 | 16 | 45 | 6.4501e-31 |
| Fragaria x ananassa | Fvb5-1 | 6 | CH_fan_534 | 4 | 7 | 0.00000343819 |
| Fragaria x ananassa | Fvb5-1 | 6 | CH_fan_72 | 7 | 8 | 0.00000000000000297734 |
| Fragaria x ananassa | Fvb1-3 | 6 | CH_fan_86 | 7 | 10 | 0.0000000000000445689 |
| Fragaria vesca | Fvb1 | 6 | CH_fve_4 | 23 | 51 | 6.20919e-47 |
| Fragaria vesca | Fvb5 | 6 | CH_fve_43 | 10 | 17 | 1.25516e-19 |
| Fragaria vesca | Fvb5 | 6 | CH_fve_452 | 4 | 6 | 0.00000511825 |
| Fragaria vesca | Fvb2 | 6 | CH_fve_663 | 3 | 3 | 0.000196882 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 6 | CH_lsa_267 | 6 | 73 | 0.00000000677732 |
| Malus domestica | Chr06 | 6 | CH_mdo_1372 | 3 | 9 | 0.000733868 |
| Manihot esculenta | Chromosome12 | 6 | CH_mes_162 | 4 | 4 | 0.0000000000102468 |
| Nelumbo nucifera | chr5 | 6 | CH_nnu_205 | 3 | 4 | 0.000000139207 |
| Punica granatum | NC_045127.1 | 6 | CH_pgr_293 | 3 | 4 | 0.00000189153 |
| Pisum sativum | chr6LG2 | 6 | CH_psa_237 | 3 | 3 | 0.000000142858 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 6 | CH_rch_798 | 4 | 8 | 0.00000388369 |
| Sechium edule | LG14 | 6 | CH_sed_224 | 3 | 5 | 0.00000267141 |
| Theobroma cacao | Chromosome_1 | 6 | CH_tca_582 | 2 | 3 | 0.000219708 |
| Tripterygium wilfordii | NC_052242.1 | 6 | CH_twi_497 | 2 | 2 | 0.000557507 |
| Vitis vinifera | chrUn | 6 | CH_vvi_370 | 3 | 3 | 0.00000143198 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |