Functional clusters
Information
- Type InterPro
- Description Peptidase S28
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr3 | 5 | CH_acertr_179 | 4 | 8 | 0.00000000514776 |
| Actinidia chinensis | Lachesis_group24 | 5 | CH_ach_123 | 3 | 3 | 0.000000247874 |
| Avicennia marina | ScioBoG_19834_HRSCAF_19925 | 5 | CH_ama_58 | 3 | 3 | 0.000000624499 |
| Aquilegia oxysepala | CHR01 | 5 | CH_aox_130 | 5 | 21 | 0.0000000388031 |
| Arabidopsis thaliana | Chr4 | 5 | CH_ath_609 | 2 | 2 | 0.000601633 |
| Brassica carinata | ChrC03 | 5 | CH_bca_631 | 3 | 3 | 0.000000311873 |
| Brassica napus | C02 | 5 | CH_bna_592 | 3 | 3 | 0.00000104602 |
| Brassica napus | BNapus_Darmor_BZH_scaffold_38 | 5 | CH_bna_593 | 3 | 3 | 0.00000104602 |
| Brassica oleracea | C2 | 5 | CH_bol_417 | 3 | 6 | 0.00000704877 |
| Brassica rapa | A02 | 5 | CH_bra_189 | 3 | 3 | 0.000000456177 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 5 | CH_bvu_277 | 3 | 5 | 0.00000863306 |
| Corylus avellana | 6 | 5 | CH_cav_155 | 4 | 6 | 0.000000000709716 |
| Citrus clementina | scaffold_4 | 5 | CH_ccl_167 | 6 | 17 | 0.0000000000279212 |
| Citrus clementina | scaffold_8 | 5 | CH_ccl_47 | 9 | 13 | 1.91872e-22 |
| Davidia involucrata | GWHABJS00000010 | 5 | CH_din_329 | 3 | 4 | 0.00000180066 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 5 | CH_eca_353 | 3 | 4 | 0.00000144956 |
| Fragaria vesca | Fvb3 | 5 | CH_fve_287 | 4 | 9 | 0.0000000254796 |
| Glycine max | Gm03 | 5 | CH_gma_378 | 3 | 3 | 0.000000618044 |
| Hydrangea macrophylla | Hma1.2p1_0051F.1 | 5 | CH_hma_59 | 4 | 4 | 0.000000000287922 |
| Lupinus albus | Lalb_Chr10 | 5 | CH_lal_266 | 3 | 4 | 0.00000138806 |
| Lotus japonicus | chr3 | 5 | CH_lja_116 | 4 | 8 | 0.00000000537232 |
| Lonicera japonica | GWHAAZE00000002 | 5 | CH_lonja_450 | 4 | 10 | 0.000000184397 |
| Lonicera japonica | GWHAAZE00000004 | 5 | CH_lonja_571 | 3 | 3 | 0.00000244786 |
| Magnolia biondii | Chr17 | 5 | CH_mbi_41 | 8 | 18 | 4.34556e-21 |
| Nelumbo nucifera | chr2 | 5 | CH_nnu_192 | 4 | 11 | 0.0000000790057 |
| Oryza sativa ssp. japonica | chr10 | 5 | CH_osa_714 | 2 | 2 | 0.000528123 |
| Pisum sativum | chr5LG3 | 5 | CH_psa_142 | 4 | 6 | 0.00000000210722 |
| Quercus lobata | 4 | 5 | CH_qlo_301 | 6 | 9 | 0.00000000000000857566 |
| Quercus lobata | 1 | 5 | CH_qlo_436 | 5 | 7 | 0.00000000000692186 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 5 | CH_rch_775 | 3 | 4 | 0.00000272673 |
| Rhododendron simsii | chr13 | 5 | CH_rsi_252 | 4 | 4 | 0.00000000016931 |
| Striga asiatica | scaffold83 | 5 | CH_sas_191 | 3 | 17 | 0.00033429 |
| Salvia bowleyana | GWHASIU00000001 | 5 | CH_sbo_230 | 4 | 7 | 0.00000000207607 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_375 | 6 | 8 | 0.0000000000000232515 |
| Sequoiadendron giganteum | chr2 | 5 | CH_sgi_393 | 8 | 49 | 0.0000000000000844738 |
| Selenicereus undatus | Scaffold_19641 | 5 | CH_sun_107 | 3 | 4 | 0.00000177385 |
| Theobroma cacao | Chromosome_9 | 5 | CH_tca_171 | 4 | 4 | 0.0000000000825063 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 5 | CH_tpr_287 | 3 | 5 | 0.000001891 |
| Vigna mungo | CM024079.1 | 5 | CH_vmu_637 | 2 | 2 | 0.000969211 |
| Acer truncatum | chr3 | 6 | CH_acertr_179 | 4 | 8 | 0.00000000514776 |
| Actinidia chinensis | Lachesis_group24 | 6 | CH_ach_123 | 3 | 3 | 0.000000247874 |
| Avicennia marina | ScioBoG_19834_HRSCAF_19925 | 6 | CH_ama_58 | 3 | 3 | 0.000000624499 |
| Aquilegia oxysepala | CHR01 | 6 | CH_aox_130 | 5 | 21 | 0.0000000388031 |
| Arabidopsis thaliana | Chr4 | 6 | CH_ath_609 | 2 | 2 | 0.000601633 |
| Brassica carinata | ChrC03 | 6 | CH_bca_631 | 3 | 3 | 0.000000311873 |
| Brassica napus | C02 | 6 | CH_bna_592 | 3 | 3 | 0.00000104602 |
| Brassica napus | BNapus_Darmor_BZH_scaffold_38 | 6 | CH_bna_593 | 3 | 3 | 0.00000104602 |
| Brassica oleracea | C2 | 6 | CH_bol_417 | 3 | 6 | 0.00000704877 |
| Brassica rapa | A02 | 6 | CH_bra_189 | 3 | 3 | 0.000000456177 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 6 | CH_bvu_277 | 3 | 5 | 0.00000863306 |
| Corylus avellana | 6 | 6 | CH_cav_155 | 4 | 6 | 0.000000000709716 |
| Citrus clementina | scaffold_4 | 6 | CH_ccl_167 | 6 | 17 | 0.0000000000279212 |
| Citrus clementina | scaffold_8 | 6 | CH_ccl_47 | 9 | 13 | 1.91872e-22 |
| Davidia involucrata | GWHABJS00000010 | 6 | CH_din_329 | 3 | 4 | 0.00000180066 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 6 | CH_eca_353 | 3 | 4 | 0.00000144956 |
| Fragaria x ananassa | Fvb3-2 | 6 | CH_fan_149 | 5 | 12 | 0.0000000000369555 |
| Fragaria vesca | Fvb3 | 6 | CH_fve_287 | 4 | 9 | 0.0000000254796 |
| Glycine max | Gm03 | 6 | CH_gma_378 | 3 | 3 | 0.000000618044 |
| Hydrangea macrophylla | Hma1.2p1_0051F.1 | 6 | CH_hma_59 | 4 | 4 | 0.000000000287922 |
| Lupinus albus | Lalb_Chr10 | 6 | CH_lal_266 | 3 | 4 | 0.00000138806 |
| Lotus japonicus | chr3 | 6 | CH_lja_116 | 4 | 8 | 0.00000000537232 |
| Lonicera japonica | GWHAAZE00000002 | 6 | CH_lonja_450 | 4 | 10 | 0.000000184397 |
| Lonicera japonica | GWHAAZE00000004 | 6 | CH_lonja_571 | 3 | 3 | 0.00000244786 |
| Magnolia biondii | Chr17 | 6 | CH_mbi_41 | 8 | 18 | 4.34556e-21 |
| Nelumbo nucifera | chr2 | 6 | CH_nnu_192 | 4 | 11 | 0.0000000790057 |
| Oryza sativa ssp. japonica | chr10 | 6 | CH_osa_714 | 2 | 2 | 0.000528123 |
| Pisum sativum | chr5LG3 | 6 | CH_psa_142 | 4 | 6 | 0.00000000210722 |
| Quercus lobata | 4 | 6 | CH_qlo_301 | 6 | 9 | 0.00000000000000857566 |
| Quercus lobata | 1 | 6 | CH_qlo_436 | 5 | 7 | 0.00000000000692186 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 6 | CH_rch_775 | 3 | 4 | 0.00000272673 |
| Rhododendron simsii | chr13 | 6 | CH_rsi_252 | 4 | 4 | 0.00000000016931 |
| Striga asiatica | scaffold83 | 6 | CH_sas_191 | 3 | 17 | 0.00033429 |
| Salvia bowleyana | GWHASIU00000001 | 6 | CH_sbo_230 | 4 | 7 | 0.00000000207607 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_375 | 6 | 8 | 0.0000000000000232515 |
| Sequoiadendron giganteum | chr2 | 6 | CH_sgi_393 | 8 | 49 | 0.0000000000000844738 |
| Selenicereus undatus | Scaffold_19641 | 6 | CH_sun_107 | 3 | 4 | 0.00000177385 |
| Theobroma cacao | Chromosome_9 | 6 | CH_tca_171 | 4 | 4 | 0.0000000000825063 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 6 | CH_tpr_287 | 3 | 5 | 0.000001891 |
| Vigna mungo | CM024079.1 | 6 | CH_vmu_637 | 2 | 2 | 0.000969211 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |