Functional clusters
Information
- Type InterPro
- Description Uncharacterised protein family Ycf2
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_10 | 5 | CH_amhyb_65 | 6 | 64 | 0.00000000148154 |
| Aquilegia oxysepala | CHR03 | 5 | CH_aox_333 | 2 | 2 | 0.0000801989 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.scaffold_36 | 5 | CH_arhy_1002 | 4 | 33 | 0.000170566 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.02 | 5 | CH_arhy_754 | 3 | 3 | 0.00000879959 |
| Brassica napus | BNapus_Darmor_BZH_scaffold_287 | 5 | CH_bna_441 | 3 | 3 | 0.0000000852732 |
| Brassica napus | C09 | 5 | CH_bna_442 | 3 | 3 | 0.0000000852732 |
| Brassica oleracea | Boleracea_scaffold_35 | 5 | CH_bol_188 | 4 | 4 | 0.00000001061 |
| Brassica oleracea | Boleracea_scaffold_29 | 5 | CH_bol_321 | 6 | 75 | 0.000000734038 |
| Brassica oleracea | Boleracea_scaffold_45 | 5 | CH_bol_373 | 5 | 36 | 0.00000238111 |
| Brassica oleracea | C2 | 5 | CH_bol_468 | 3 | 3 | 0.0000170837 |
| Brassica oleracea | Boleracea_scaffold_47 | 5 | CH_bol_71 | 7 | 23 | 0.000000000000525199 |
| Brassica rapa | Brapa_scaffold_59 | 5 | CH_bra_182 | 5 | 42 | 0.000000332476 |
| Brassica rapa | Brapa_scaffold_25 | 5 | CH_bra_248 | 3 | 3 | 0.00000315177 |
| Brassica rapa | Brapa_scaffold_143 | 5 | CH_bra_249 | 3 | 3 | 0.00000315177 |
| Capsicum annuum | PGAv.1.6.scaffold1298 | 5 | CH_can_334 | 4 | 10 | 0.000000483702 |
| Erythranthe guttata | scaffold_4 | 5 | CH_egut_636 | 4 | 66 | 0.000406383 |
| Helianthus annuus | HanXRQChr11 | 5 | CH_han_346 | 4 | 4 | 0.00000000708419 |
| Helianthus annuus | HanXRQChr10 | 5 | CH_han_347 | 4 | 4 | 0.00000000708419 |
| Helianthus annuus | HanXRQChr11 | 5 | CH_han_703 | 3 | 3 | 0.0000122212 |
| Helianthus annuus | HanXRQChr10 | 5 | CH_han_704 | 3 | 3 | 0.0000122212 |
| Hydrangea macrophylla | Hma1.2p1_0192F.1 | 5 | CH_hma_563 | 2 | 4 | 0.000333259 |
| Lupinus albus | Lalb_Chr25 | 5 | CH_lal_127 | 4 | 4 | 0.00000000317257 |
| Lupinus albus | Lalb_Chr13 | 5 | CH_lal_89 | 5 | 7 | 0.0000000000314467 |
| Lonicera japonica | GWHAAZE00000002 | 5 | CH_lonja_364 | 5 | 58 | 0.00000000924543 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 5 | CH_lsa_493 | 3 | 3 | 0.00000527098 |
| Malus domestica | Chr15 | 5 | CH_mdo_353 | 3 | 3 | 0.00000000862825 |
| Nelumbo nucifera | scaffold029 | 5 | CH_nnu_139 | 4 | 4 | 0.00000000686536 |
| Nelumbo nucifera | scaffold020 | 5 | CH_nnu_39 | 6 | 6 | 0.00000000000000219857 |
| Nicotiana tabacum | Nitab4.5_0001761 | 5 | CH_nta_50 | 5 | 10 | 0.00000000119381 |
| Olea europaea | chr17 | 5 | CH_oeu_164 | 5 | 29 | 0.000000240868 |
| Olea europaea | chr1 | 5 | CH_oeu_86 | 6 | 39 | 0.00000000316843 |
| Quercus lobata | CM012294 | 5 | CH_qlo_1448 | 2 | 2 | 0.000154887 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_281 | 4 | 4 | 0.00000000000665272 |
| Simmondsia chinensis | GWHAASQ00000025 | 5 | CH_sci_336 | 3 | 12 | 0.000133728 |
| Sechium edule | Contig00297 | 5 | CH_sed_188 | 3 | 3 | 0.000000427548 |
| Sechium edule | LG13 | 5 | CH_sed_272 | 4 | 48 | 0.0000147412 |
| Solanum lycopersicum | SL4.0ch12 | 5 | CH_sly_103 | 9 | 24 | 0.0000000000000109121 |
| Solanum lycopersicum | SL4.0ch09 | 5 | CH_sly_199 | 5 | 5 | 0.000000000859777 |
| Solanum lycopersicum | SL4.0ch01 | 5 | CH_sly_310 | 5 | 9 | 0.000000107664 |
| Solanum lycopersicum | SL4.0ch02 | 5 | CH_sly_352 | 4 | 4 | 0.000000464989 |
| Solanum lycopersicum | SL4.0ch02 | 5 | CH_sly_353 | 4 | 4 | 0.000000464989 |
| Solanum lycopersicum | SL4.0ch04 | 5 | CH_sly_769 | 3 | 3 | 0.000247556 |
| Solanum lycopersicum | SL4.0ch00 | 5 | CH_sly_770 | 3 | 3 | 0.000247556 |
| Utricularia gibba | unitig_91 | 5 | CH_ugi_77 | 4 | 41 | 0.00000250746 |
| Vanilla planifolia | JADCNL010000483.1 | 5 | CH_vpl_65 | 5 | 43 | 0.000000000214907 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_10 | 6 | CH_amhyb_65 | 6 | 64 | 0.00000000148154 |
| Aquilegia oxysepala | CHR03 | 6 | CH_aox_333 | 2 | 2 | 0.0000801989 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.scaffold_36 | 6 | CH_arhy_1002 | 4 | 33 | 0.000170566 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.02 | 6 | CH_arhy_754 | 3 | 3 | 0.00000879959 |
| Brassica napus | BNapus_Darmor_BZH_scaffold_287 | 6 | CH_bna_441 | 3 | 3 | 0.0000000852732 |
| Brassica napus | C09 | 6 | CH_bna_442 | 3 | 3 | 0.0000000852732 |
| Brassica oleracea | Boleracea_scaffold_35 | 6 | CH_bol_188 | 4 | 4 | 0.00000001061 |
| Brassica oleracea | Boleracea_scaffold_29 | 6 | CH_bol_321 | 6 | 75 | 0.000000734038 |
| Brassica oleracea | Boleracea_scaffold_45 | 6 | CH_bol_373 | 5 | 36 | 0.00000238111 |
| Brassica oleracea | C2 | 6 | CH_bol_468 | 3 | 3 | 0.0000170837 |
| Brassica oleracea | Boleracea_scaffold_47 | 6 | CH_bol_71 | 7 | 23 | 0.000000000000525199 |
| Brassica rapa | Brapa_scaffold_59 | 6 | CH_bra_182 | 5 | 42 | 0.000000332476 |
| Brassica rapa | Brapa_scaffold_25 | 6 | CH_bra_248 | 3 | 3 | 0.00000315177 |
| Brassica rapa | Brapa_scaffold_143 | 6 | CH_bra_249 | 3 | 3 | 0.00000315177 |
| Capsicum annuum | PGAv.1.6.scaffold1298 | 6 | CH_can_334 | 4 | 10 | 0.000000483702 |
| Erythranthe guttata | scaffold_4 | 6 | CH_egut_636 | 4 | 66 | 0.000406383 |
| Helianthus annuus | HanXRQChr11 | 6 | CH_han_346 | 4 | 4 | 0.00000000708419 |
| Helianthus annuus | HanXRQChr10 | 6 | CH_han_347 | 4 | 4 | 0.00000000708419 |
| Helianthus annuus | HanXRQChr11 | 6 | CH_han_703 | 3 | 3 | 0.0000122212 |
| Helianthus annuus | HanXRQChr10 | 6 | CH_han_704 | 3 | 3 | 0.0000122212 |
| Hydrangea macrophylla | Hma1.2p1_0192F.1 | 6 | CH_hma_563 | 2 | 4 | 0.000333259 |
| Lupinus albus | Lalb_Chr25 | 6 | CH_lal_127 | 4 | 4 | 0.00000000317257 |
| Lupinus albus | Lalb_Chr13 | 6 | CH_lal_89 | 5 | 7 | 0.0000000000314467 |
| Lonicera japonica | GWHAAZE00000002 | 6 | CH_lonja_364 | 5 | 58 | 0.00000000924543 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 6 | CH_lsa_493 | 3 | 3 | 0.00000527098 |
| Malus domestica | Chr15 | 6 | CH_mdo_353 | 3 | 3 | 0.00000000862825 |
| Nelumbo nucifera | scaffold029 | 6 | CH_nnu_139 | 4 | 4 | 0.00000000686536 |
| Nelumbo nucifera | scaffold020 | 6 | CH_nnu_39 | 6 | 6 | 0.00000000000000219857 |
| Nicotiana tabacum | Nitab4.5_0001761 | 6 | CH_nta_50 | 5 | 10 | 0.00000000119381 |
| Olea europaea | chr17 | 6 | CH_oeu_164 | 5 | 29 | 0.000000240868 |
| Olea europaea | chr1 | 6 | CH_oeu_86 | 6 | 39 | 0.00000000316843 |
| Quercus lobata | CM012294 | 6 | CH_qlo_1448 | 2 | 2 | 0.000154887 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_281 | 4 | 4 | 0.00000000000665272 |
| Simmondsia chinensis | GWHAASQ00000025 | 6 | CH_sci_336 | 3 | 12 | 0.000133728 |
| Sechium edule | Contig00297 | 6 | CH_sed_188 | 3 | 3 | 0.000000427548 |
| Sechium edule | LG13 | 6 | CH_sed_272 | 4 | 48 | 0.0000147412 |
| Solanum lycopersicum | SL4.0ch12 | 6 | CH_sly_103 | 9 | 24 | 0.0000000000000109121 |
| Solanum lycopersicum | SL4.0ch09 | 6 | CH_sly_199 | 5 | 5 | 0.000000000859777 |
| Solanum lycopersicum | SL4.0ch01 | 6 | CH_sly_310 | 5 | 9 | 0.000000107664 |
| Solanum lycopersicum | SL4.0ch02 | 6 | CH_sly_352 | 4 | 4 | 0.000000464989 |
| Solanum lycopersicum | SL4.0ch02 | 6 | CH_sly_353 | 4 | 4 | 0.000000464989 |
| Solanum lycopersicum | SL4.0ch04 | 6 | CH_sly_769 | 3 | 3 | 0.000247556 |
| Solanum lycopersicum | SL4.0ch00 | 6 | CH_sly_770 | 3 | 3 | 0.000247556 |
| Utricularia gibba | unitig_91 | 6 | CH_ugi_77 | 4 | 41 | 0.00000250746 |
| Vanilla planifolia | JADCNL010000483.1 | 6 | CH_vpl_65 | 5 | 43 | 0.000000000214907 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |