Functional clusters
Information
- Type InterPro
- Description Beta-glucanase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Avicennia marina | ScioBoG_19538_HRSCAF_19626 | 5 | CH_ama_76 | 3 | 3 | 0.00000318941 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_13 | 5 | CH_amhyb_56 | 4 | 6 | 0.000000000402545 |
| Brassica carinata | ChrB03 | 5 | CH_bca_837 | 3 | 3 | 0.0000020049 |
| Brassica napus | C03 | 5 | CH_bna_683 | 3 | 3 | 0.00000309258 |
| Brassica napus | A08 | 5 | CH_bna_820 | 3 | 4 | 0.0000123675 |
| Brassica oleracea | C3 | 5 | CH_bol_350 | 3 | 3 | 0.00000155292 |
| Brassica rapa | A08 | 5 | CH_bra_287 | 3 | 4 | 0.000010713 |
| Capsella rubella | scaffold_7 | 5 | CH_cru_330 | 3 | 3 | 0.00000291895 |
| Erythranthe guttata | scaffold_1 | 5 | CH_egut_692 | 3 | 7 | 0.000638606 |
| Gossypium hirsutum | D08 | 5 | CH_ghi_432 | 4 | 8 | 0.0000000424445 |
| Gossypium hirsutum | A08 | 5 | CH_ghi_905 | 3 | 8 | 0.000121083 |
| Gossypium raimondii | Chr04 | 5 | CH_gra_215 | 4 | 7 | 0.0000000161844 |
| Olea europaea | chr8 | 5 | CH_oeu_181 | 3 | 3 | 0.000000705222 |
| Papaver somniferum | NC_039365.1 | 5 | CH_pso_616 | 3 | 4 | 0.00000207065 |
| Salvia bowleyana | GWHASIU00000005 | 5 | CH_sbo_342 | 3 | 3 | 0.000000888078 |
| Sequoiadendron giganteum | chr8 | 5 | CH_sgi_1323 | 3 | 3 | 0.00000161972 |
| Sequoiadendron giganteum | chr10 | 5 | CH_sgi_1324 | 3 | 3 | 0.00000161972 |
| Avicennia marina | ScioBoG_19538_HRSCAF_19626 | 6 | CH_ama_76 | 3 | 3 | 0.00000318941 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_13 | 6 | CH_amhyb_56 | 4 | 6 | 0.000000000402545 |
| Brassica carinata | ChrB03 | 6 | CH_bca_837 | 3 | 3 | 0.0000020049 |
| Brassica napus | C03 | 6 | CH_bna_683 | 3 | 3 | 0.00000309258 |
| Brassica napus | A08 | 6 | CH_bna_820 | 3 | 4 | 0.0000123675 |
| Brassica oleracea | C3 | 6 | CH_bol_350 | 3 | 3 | 0.00000155292 |
| Brassica rapa | A08 | 6 | CH_bra_287 | 3 | 4 | 0.000010713 |
| Cucumis melo | chr05 | 6 | CH_cme_61 | 5 | 5 | 0.000000000000446167 |
| Capsella rubella | scaffold_7 | 6 | CH_cru_330 | 3 | 3 | 0.00000291895 |
| Erythranthe guttata | scaffold_1 | 6 | CH_egut_692 | 3 | 7 | 0.000638606 |
| Gossypium hirsutum | D08 | 6 | CH_ghi_432 | 4 | 8 | 0.0000000424445 |
| Gossypium hirsutum | A08 | 6 | CH_ghi_905 | 3 | 8 | 0.000121083 |
| Gossypium raimondii | Chr04 | 6 | CH_gra_215 | 4 | 7 | 0.0000000161844 |
| Olea europaea | chr8 | 6 | CH_oeu_181 | 3 | 3 | 0.000000705222 |
| Papaver somniferum | NC_039365.1 | 6 | CH_pso_616 | 3 | 4 | 0.00000207065 |
| Salvia bowleyana | GWHASIU00000005 | 6 | CH_sbo_342 | 3 | 3 | 0.000000888078 |
| Sequoiadendron giganteum | chr8 | 6 | CH_sgi_1323 | 3 | 3 | 0.00000161972 |
| Sequoiadendron giganteum | chr10 | 6 | CH_sgi_1324 | 3 | 3 | 0.00000161972 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |