Functional clusters
Information
- Type InterPro
- Description Ccc1 family
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr11 | 5 | CH_acertr_288 | 4 | 10 | 0.0000001091 |
| Arabidopsis lyrata | scaffold_7 | 5 | CH_aly_316 | 3 | 3 | 0.00000186904 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_4 | 5 | CH_amhyb_272 | 3 | 9 | 0.000147052 |
| Aquilegia oxysepala | CHR05 | 5 | CH_aox_219 | 4 | 26 | 0.00000290251 |
| Arabidopsis thaliana | Chr4 | 5 | CH_ath_293 | 3 | 8 | 0.00000295404 |
| Brassica carinata | ChrC09 | 5 | CH_bca_874 | 3 | 3 | 0.00000250458 |
| Brassica carinata | Contig531 | 5 | CH_bca_875 | 3 | 3 | 0.00000250458 |
| Brassica napus | A01 | 5 | CH_bna_627 | 3 | 3 | 0.00000169306 |
| Brassica napus | C01 | 5 | CH_bna_628 | 3 | 3 | 0.00000169306 |
| Brassica oleracea | C1 | 5 | CH_bol_313 | 3 | 3 | 0.000000583347 |
| Brassica rapa | A01 | 5 | CH_bra_209 | 3 | 3 | 0.00000100635 |
| Beta vulgaris | Chr1_EL10_PGA_scaffold3 | 5 | CH_bvu_55 | 5 | 5 | 0.0000000000000888214 |
| Cannabis sativa | NC_044373.1 | 5 | CH_cansat_183 | 5 | 31 | 0.0000000470971 |
| Capsicum annuum | PGAv.1.6.scaffold523 | 5 | CH_can_366 | 3 | 3 | 0.00000122846 |
| Cicer arietinum L. | Ca_LG6_v3 | 5 | CH_car_100 | 3 | 3 | 0.000000763278 |
| Carya illinoinensis | Chr05 | 5 | CH_cil_508 | 3 | 6 | 0.0000190055 |
| Citrullus lanatus | CG_Chr09 | 5 | CH_cla_122 | 4 | 17 | 0.000000626344 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1611 | 5 | CH_cqu_432 | 4 | 14 | 0.00000123446 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2081 | 5 | CH_cqu_74 | 6 | 6 | 1.45828e-16 |
| Capsella rubella | scaffold_7 | 5 | CH_cru_344 | 3 | 4 | 0.00000529125 |
| Capsella rubella | scaffold_5 | 5 | CH_cru_623 | 3 | 15 | 0.000600187 |
| Davidia involucrata | GWHABJS00000005 | 5 | CH_din_182 | 5 | 20 | 0.00000000448376 |
| Durio zibethinus | NW_019167915.1 | 5 | CH_dzi_156 | 4 | 6 | 0.0000000106588 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 5 | CH_eca_135 | 4 | 4 | 0.000000000271342 |
| Erigeron canadensis | Conyza_canadensis_scaffold:7 | 5 | CH_eca_403 | 3 | 4 | 0.00000439671 |
| Eucalyptus grandis | Chr09 | 5 | CH_egr_845 | 3 | 3 | 0.00000146957 |
| Eutrema salsugineum | scaffold_1 | 5 | CH_esa_199 | 3 | 3 | 0.000000487118 |
| Gossypium hirsutum | A04 | 5 | CH_ghi_306 | 4 | 4 | 0.000000000417795 |
| Gossypium hirsutum | D04 | 5 | CH_ghi_355 | 4 | 5 | 0.00000000208854 |
| Glycine max | Gm05 | 5 | CH_gma_209 | 4 | 4 | 0.00000000120003 |
| Glycine max | Gm08 | 5 | CH_gma_210 | 4 | 4 | 0.00000000120003 |
| Gossypium raimondii | Chr12 | 5 | CH_gra_178 | 4 | 5 | 0.000000000762636 |
| Helianthus annuus | HanXRQChr11 | 5 | CH_han_642 | 5 | 53 | 0.0000046298 |
| Lupinus albus | Lalb_Chr12 | 5 | CH_lal_271 | 3 | 3 | 0.00000150394 |
| Lotus japonicus | chr4 | 5 | CH_lja_259 | 3 | 3 | 0.0000012656 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 5 | CH_lsa_43 | 8 | 10 | 1.01559e-21 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 5 | CH_lsa_632 | 3 | 6 | 0.0000767288 |
| Magnolia biondii | Chr17 | 5 | CH_mbi_179 | 5 | 9 | 0.0000000000229446 |
| Medicago truncatula | chr4 | 5 | CH_mtr_195 | 5 | 5 | 0.0000000000000275095 |
| Nelumbo nucifera | chr3 | 5 | CH_nnu_286 | 3 | 4 | 0.00000398073 |
| Olea europaea | chr15 | 5 | CH_oeu_232 | 3 | 4 | 0.00000622151 |
| Petunia axillaris | Peaxi162Scf00001 | 5 | CH_pax_169 | 4 | 6 | 0.0000000479186 |
| Petunia axillaris | Peaxi162Scf01290 | 5 | CH_pax_8 | 9 | 13 | 2.95738e-23 |
| Pisum sativum | chr7LG7 | 5 | CH_psa_260 | 4 | 15 | 0.00000041464 |
| Phaseolus vulgaris | Chr02 | 5 | CH_pvu_165 | 4 | 4 | 0.00000000162435 |
| Phaseolus vulgaris | Chr02 | 5 | CH_pvu_563 | 3 | 9 | 0.000308811 |
| Quercus lobata | 11 | 5 | CH_qlo_200 | 7 | 10 | 2.04684e-18 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_341 | 4 | 4 | 0.0000000000940884 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 5 | CH_rch_817 | 3 | 5 | 0.00000524297 |
| Salvia bowleyana | GWHASIU00000003 | 5 | CH_sbo_220 | 5 | 21 | 0.00000000130542 |
| Sechium edule | LG09 | 5 | CH_sed_173 | 5 | 48 | 0.000000260786 |
| Solanum lycopersicum | SL4.0ch01 | 5 | CH_sly_128 | 5 | 6 | 0.000000000000422964 |
| Schrenkiella parvula | ch7-5 | 5 | CH_spa_153 | 3 | 3 | 0.00000153432 |
| Solanum pennellii | Spenn-ch01 | 5 | CH_spe_82 | 5 | 6 | 0.000000000000139493 |
| Solanum tuberosum | ST4.03ch01 | 5 | CH_stu_87 | 6 | 8 | 3.82016e-16 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 5 | CH_tpr_35 | 6 | 7 | 6.71817e-16 |
| Vigna mungo | CM024069.1 | 5 | CH_vmu_117 | 4 | 5 | 0.00000000736271 |
| Vigna mungo | CM024069.1 | 5 | CH_vmu_240 | 3 | 3 | 0.0000035071 |
| Acer truncatum | chr11 | 6 | CH_acertr_288 | 4 | 10 | 0.0000001091 |
| Arabidopsis lyrata | scaffold_7 | 6 | CH_aly_316 | 3 | 3 | 0.00000186904 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_4 | 6 | CH_amhyb_272 | 3 | 9 | 0.000147052 |
| Aquilegia oxysepala | CHR05 | 6 | CH_aox_219 | 4 | 26 | 0.00000290251 |
| Arabidopsis thaliana | Chr4 | 6 | CH_ath_293 | 3 | 8 | 0.00000295404 |
| Brassica carinata | ChrC09 | 6 | CH_bca_874 | 3 | 3 | 0.00000250458 |
| Brassica carinata | Contig531 | 6 | CH_bca_875 | 3 | 3 | 0.00000250458 |
| Brassica napus | A01 | 6 | CH_bna_627 | 3 | 3 | 0.00000169306 |
| Brassica napus | C01 | 6 | CH_bna_628 | 3 | 3 | 0.00000169306 |
| Brassica oleracea | C1 | 6 | CH_bol_313 | 3 | 3 | 0.000000583347 |
| Brassica rapa | A01 | 6 | CH_bra_209 | 3 | 3 | 0.00000100635 |
| Beta vulgaris | Chr1_EL10_PGA_scaffold3 | 6 | CH_bvu_55 | 5 | 5 | 0.0000000000000888214 |
| Cannabis sativa | NC_044373.1 | 6 | CH_cansat_183 | 5 | 31 | 0.0000000470971 |
| Capsicum annuum | PGAv.1.6.scaffold523 | 6 | CH_can_366 | 3 | 3 | 0.00000122846 |
| Cicer arietinum L. | Ca_LG6_v3 | 6 | CH_car_100 | 3 | 3 | 0.000000763278 |
| Carya illinoinensis | Chr05 | 6 | CH_cil_508 | 3 | 6 | 0.0000190055 |
| Citrullus lanatus | CG_Chr09 | 6 | CH_cla_122 | 4 | 17 | 0.000000626344 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1611 | 6 | CH_cqu_432 | 4 | 14 | 0.00000123446 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2081 | 6 | CH_cqu_74 | 6 | 6 | 1.45828e-16 |
| Capsella rubella | scaffold_7 | 6 | CH_cru_344 | 3 | 4 | 0.00000529125 |
| Capsella rubella | scaffold_5 | 6 | CH_cru_623 | 3 | 15 | 0.000600187 |
| Davidia involucrata | GWHABJS00000005 | 6 | CH_din_182 | 5 | 20 | 0.00000000448376 |
| Durio zibethinus | NW_019167915.1 | 6 | CH_dzi_156 | 4 | 6 | 0.0000000106588 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 6 | CH_eca_135 | 4 | 4 | 0.000000000271342 |
| Erigeron canadensis | Conyza_canadensis_scaffold:7 | 6 | CH_eca_403 | 3 | 4 | 0.00000439671 |
| Eucalyptus grandis | Chr09 | 6 | CH_egr_845 | 3 | 3 | 0.00000146957 |
| Eutrema salsugineum | scaffold_1 | 6 | CH_esa_199 | 3 | 3 | 0.000000487118 |
| Gossypium hirsutum | A04 | 6 | CH_ghi_306 | 4 | 4 | 0.000000000417795 |
| Gossypium hirsutum | D04 | 6 | CH_ghi_355 | 4 | 5 | 0.00000000208854 |
| Glycine max | Gm05 | 6 | CH_gma_209 | 4 | 4 | 0.00000000120003 |
| Glycine max | Gm08 | 6 | CH_gma_210 | 4 | 4 | 0.00000000120003 |
| Gossypium raimondii | Chr12 | 6 | CH_gra_178 | 4 | 5 | 0.000000000762636 |
| Helianthus annuus | HanXRQChr11 | 6 | CH_han_642 | 5 | 53 | 0.0000046298 |
| Lupinus albus | Lalb_Chr12 | 6 | CH_lal_271 | 3 | 3 | 0.00000150394 |
| Lotus japonicus | chr4 | 6 | CH_lja_259 | 3 | 3 | 0.0000012656 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 6 | CH_lsa_43 | 8 | 10 | 1.01559e-21 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 6 | CH_lsa_632 | 3 | 6 | 0.0000767288 |
| Magnolia biondii | Chr17 | 6 | CH_mbi_179 | 5 | 9 | 0.0000000000229446 |
| Medicago truncatula | chr4 | 6 | CH_mtr_195 | 5 | 5 | 0.0000000000000275095 |
| Nelumbo nucifera | chr3 | 6 | CH_nnu_286 | 3 | 4 | 0.00000398073 |
| Olea europaea | chr15 | 6 | CH_oeu_232 | 3 | 4 | 0.00000622151 |
| Petunia axillaris | Peaxi162Scf00001 | 6 | CH_pax_169 | 4 | 6 | 0.0000000479186 |
| Petunia axillaris | Peaxi162Scf01290 | 6 | CH_pax_8 | 9 | 13 | 2.95738e-23 |
| Pisum sativum | chr7LG7 | 6 | CH_psa_260 | 4 | 15 | 0.00000041464 |
| Phaseolus vulgaris | Chr02 | 6 | CH_pvu_165 | 4 | 4 | 0.00000000162435 |
| Phaseolus vulgaris | Chr02 | 6 | CH_pvu_563 | 3 | 9 | 0.000308811 |
| Quercus lobata | 11 | 6 | CH_qlo_200 | 7 | 10 | 2.04684e-18 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_341 | 4 | 4 | 0.0000000000940884 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 6 | CH_rch_817 | 3 | 5 | 0.00000524297 |
| Salvia bowleyana | GWHASIU00000003 | 6 | CH_sbo_220 | 5 | 21 | 0.00000000130542 |
| Sechium edule | LG09 | 6 | CH_sed_173 | 5 | 48 | 0.000000260786 |
| Solanum lycopersicum | SL4.0ch01 | 6 | CH_sly_128 | 5 | 6 | 0.000000000000422964 |
| Schrenkiella parvula | ch7-5 | 6 | CH_spa_153 | 3 | 3 | 0.00000153432 |
| Solanum pennellii | Spenn-ch01 | 6 | CH_spe_82 | 5 | 6 | 0.000000000000139493 |
| Solanum tuberosum | ST4.03ch01 | 6 | CH_stu_87 | 6 | 8 | 3.82016e-16 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 6 | CH_tpr_35 | 6 | 7 | 6.71817e-16 |
| Vigna mungo | CM024069.1 | 6 | CH_vmu_117 | 4 | 5 | 0.00000000736271 |
| Vigna mungo | CM024069.1 | 6 | CH_vmu_240 | 3 | 3 | 0.0000035071 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |