Functional clusters

Information

  • Type InterPro
  • Description NmrA-like domain

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-2 5 CH_aar_230 3 4 0.0000109835
Acer truncatum chr2 5 CH_acertr_415 3 3 0.0000050694
Acer truncatum chr6 5 CH_acertr_674 4 34 0.000114633
Acer truncatum chr3 5 CH_acertr_694 3 7 0.000177142
Arabidopsis lyrata scaffold_2 5 CH_aly_320 3 4 0.00000219539
Aquilegia oxysepala CHR06 5 CH_aox_76 4 4 0.000000000195007
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 5 CH_arhy_275 5 5 0.00000000000924312
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 5 CH_arhy_471 4 5 0.0000000717584
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 5 CH_arhy_833 3 3 0.0000218007
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 5 CH_arhy_834 3 3 0.0000218007
Arabidopsis thaliana Chr1 5 CH_ath_252 3 3 0.000000413645
Amborella trichopoda AmTr_v1.0_scaffold00070 5 CH_atr_298 3 3 0.0000064373
Amborella trichopoda AmTr_v1.0_scaffold00048 5 CH_atr_75 5 5 0.00000000000184879
Brassica carinata Contig324 5 CH_bca_160 5 8 0.00000000000294963
Brassica carinata ChrC08 5 CH_bca_776 3 3 0.00000121391
Brassica carinata ChrB03 5 CH_bca_777 3 3 0.00000121391
Brassica napus C06 5 CH_bna_558 3 3 0.000000687354
Brassica oleracea C6 5 CH_bol_275 3 3 0.000000264429
Camellia sinensis var. sinensis Chr12 5 CH_camsi_215 6 17 0.0000000000075686
Camellia sinensis var. sinensis Chr9 5 CH_camsi_497 4 7 0.000000107457
Cannabis sativa NC_044374.1 5 CH_cansat_303 3 4 0.0000056903
Cannabis sativa NC_044374.1 5 CH_cansat_304 3 4 0.0000056903
Corylus avellana 11 5 CH_cav_160 4 4 0.00000000135355
Chara braunii BFEA01000056 5 CH_cbr_303 2 2 0.000431562
Citrus clementina scaffold_8 5 CH_ccl_41 9 10 3.80219e-23
Citrus clementina scaffold_3 5 CH_ccl_60 8 9 5.2128e-20
Carpinus fangiana Cfa05 5 CH_cfa_213 4 6 0.0000000464887
Cardamine hirsuta Chr2 5 CH_chi_348 3 4 0.00000240755
Carya illinoinensis Chr01 5 CH_cil_466 3 3 0.0000047026
Carya illinoinensis Chr03 5 CH_cil_467 3 3 0.0000047026
Citrullus lanatus CG_Chr02 5 CH_cla_33 5 6 0.0000000000121712
Capsella rubella scaffold_2 5 CH_cru_86 5 5 0.000000000000169792
Cucumis sativus L. chr2 5 CH_csa_229 3 3 0.00000172471
Cucumis sativus L. chr7 5 CH_csa_262 3 4 0.00000689682
Daucus carota DCARv2_Chr1 5 CH_dca_361 3 4 0.0000199077
Davidia involucrata GWHABJS00000003 5 CH_din_412 3 4 0.0000171031
Durio zibethinus NW_019168037.1 5 CH_dzi_341 3 5 0.0000219006
Erigeron canadensis Conyza_canadensis_scaffold:2 5 CH_eca_344 3 3 0.0000010994
Erigeron canadensis Conyza_canadensis_scaffold:5 5 CH_eca_444 3 5 0.0000109895
Eucalyptus grandis Chr09 5 CH_egr_1126 3 3 0.000100712
Eucalyptus grandis Chr05 5 CH_egr_207 8 10 1.78734e-17
Eucalyptus grandis Chr11 5 CH_egr_487 5 5 0.000000000186491
Eucalyptus grandis Chr10 5 CH_egr_572 5 7 0.00000000390749
Eucalyptus grandis Chr02 5 CH_egr_612 5 8 0.0000000104082
Eucalyptus grandis Chr05 5 CH_egr_659 7 50 0.0000000300931
Fragaria vesca Fvb5 5 CH_fve_230 4 5 0.00000000418512
Fragaria vesca Fvb2 5 CH_fve_310 4 8 0.0000000585409
Glycine max Gm11 5 CH_gma_107 5 5 0.00000000000102403
Glycine max Gm01 5 CH_gma_108 5 5 0.00000000000102403
Helianthus annuus HanXRQChr03 5 CH_han_292 4 4 0.00000000083878
Helianthus annuus HanXRQChr03 5 CH_han_80 7 10 2.43824e-18
Lotus japonicus chr3 5 CH_lja_106 4 4 0.00000000149748
Lonicera japonica GWHAAZE00000007 5 CH_lonja_342 4 4 0.00000000385683
Lonicera japonica GWHAAZE00000009 5 CH_lonja_343 4 4 0.00000000385683
Magnolia biondii Chr10 5 CH_mbi_587 3 3 0.0000034284
Magnolia biondii Chr01 5 CH_mbi_588 3 3 0.0000034284
Malus domestica Chr10 5 CH_mdo_315 4 5 0.00000000396224
Malus domestica Chr08 5 CH_mdo_632 3 3 0.00000245905
Manihot esculenta Chromosome17 5 CH_mes_411 3 3 0.00000637628
Medicago truncatula chr3 5 CH_mtr_1226 3 11 0.000340247
Medicago truncatula chr4 5 CH_mtr_723 3 3 0.00000206626
Medicago truncatula chr5 5 CH_mtr_817 3 4 0.00000826296
Olea europaea scaffold399 5 CH_oeu_195 3 3 0.00000122238
Oryza sativa ssp. japonica chr12 5 CH_osa_463 3 8 0.0000514918
Prunus persica Pp05 5 CH_ppe_134 6 9 0.0000000000000349355
Prunus persica Pp04 5 CH_ppe_326 4 7 0.0000000792401
Pisum sativum chr5LG3 5 CH_psa_161 4 6 0.00000000871479
Pisum sativum chr2LG1 5 CH_psa_346 3 4 0.00000742666
Populus trichocarpa Chr13 5 CH_ptr_465 3 3 0.00000887524
Populus trichocarpa Chr09 5 CH_ptr_466 3 3 0.00000887524
Phaseolus vulgaris Chr05 5 CH_pvu_137 5 7 0.000000000093318
Phaseolus vulgaris Chr11 5 CH_pvu_189 4 4 0.00000000712215
Phaseolus vulgaris Chr02 5 CH_pvu_75 6 6 0.00000000000000261507
Quercus lobata 6 5 CH_qlo_102 10 14 2.42124e-24
Quercus lobata CM012294 5 CH_qlo_1154 3 3 0.0000239265
Quercus lobata CM012294 5 CH_qlo_1155 3 3 0.0000239265
Quercus lobata 12 5 CH_qlo_176 8 10 2.51474e-19
Quercus lobata 11 5 CH_qlo_706 4 4 0.0000000191481
Rosa chinensis RcHm_v2.0_Chr7 5 CH_rch_238 5 6 0.000000000000341285
Rosa chinensis RcHm_v2.0_Chr6 5 CH_rch_710 3 3 0.00000108468
Rosa chinensis RcHm_v2.0_Chr6 5 CH_rch_859 3 5 0.0000108424
Rhododendron simsii chr06 5 CH_rsi_656 3 8 0.0000576527
Salvia bowleyana GWHASIU00000005 5 CH_sbo_136 5 6 0.000000000000248166
Salvia bowleyana GWHASIU00000008 5 CH_sbo_344 3 3 0.000000888078
Salix brachista GWHAAZH00000009 5 CH_sbr_363 3 3 0.00000577168
Simmondsia chinensis GWHAASQ00000018 5 CH_sci_164 3 3 0.000000608964
Sequoiadendron giganteum chr1 5 CH_sgi_1092 5 13 0.000000126743
Sequoiadendron giganteum chr4 5 CH_sgi_1913 3 3 0.0000741335
Sequoiadendron giganteum chr2 5 CH_sgi_471 6 7 0.000000000000777657
Sequoiadendron giganteum chr6 5 CH_sgi_62 15 27 1.86071e-33
Solanum lycopersicum SL4.0ch10 5 CH_sly_376 3 3 0.000000852661
Selaginella moellendorffii scaffold_0 5 CH_smo_176 3 5 0.0000215642
Solanum pennellii Spenn-ch10 5 CH_spe_364 3 4 0.00000142427
Solanum tuberosum ST4.03ch10 5 CH_stu_758 3 15 0.000295101
Selenicereus undatus Scaffold_33678 5 CH_sun_27 5 7 0.00000000000878708
Trochodendron aralioides group14 5 CH_tar_117 5 6 0.0000000000574325
Trochodendron aralioides group11 5 CH_tar_280 4 6 0.000000199158
Trochodendron aralioides group10 5 CH_tar_433 3 3 0.0000177125
Trochodendron aralioides group5 5 CH_tar_434 3 3 0.0000177125
Trochodendron aralioides group14 5 CH_tar_70 6 8 0.000000000000184959
Tarenaya hassleriana NW_010965373.1 5 CH_tha_159 3 3 0.00000409817
Tarenaya hassleriana NW_010965372.1 5 CH_tha_69 4 4 0.00000000186072
Trifolium pratense Tp57577_TGAC_v2_LG2 5 CH_tpr_216 4 6 0.0000000944809
Trifolium pratense Tp57577_TGAC_v2_LG7 5 CH_tpr_371 3 3 0.00000979883
Tripterygium wilfordii NC_052242.1 5 CH_twi_263 3 3 0.00000531507
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_30 7 7 1.61462e-18
Vigna mungo CM024076.1 5 CH_vmu_217 3 3 0.00000137779
Vanilla planifolia CM028153.1 5 CH_vpl_24 6 7 0.00000000000000104169
Vanilla planifolia CM028159.1 5 CH_vpl_241 3 3 0.00000298096
Vitis vinifera chr2 5 CH_vvi_432 3 3 0.0000133652
Vitis vinifera chr3 5 CH_vvi_79 7 9 9.35859e-17
Aethionema arabicum LG-2 6 CH_aar_230 3 4 0.0000109835
Acer truncatum chr2 6 CH_acertr_415 3 3 0.0000050694
Acer truncatum chr6 6 CH_acertr_674 4 34 0.000114633
Acer truncatum chr3 6 CH_acertr_694 3 7 0.000177142
Arabidopsis lyrata scaffold_2 6 CH_aly_320 3 4 0.00000219539
Aquilegia oxysepala CHR06 6 CH_aox_76 4 4 0.000000000195007
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 6 CH_arhy_275 5 5 0.00000000000924312
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 6 CH_arhy_471 4 5 0.0000000717584
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 6 CH_arhy_833 3 3 0.0000218007
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 6 CH_arhy_834 3 3 0.0000218007
Arabidopsis thaliana Chr1 6 CH_ath_252 3 3 0.000000413645
Amborella trichopoda AmTr_v1.0_scaffold00070 6 CH_atr_298 3 3 0.0000064373
Amborella trichopoda AmTr_v1.0_scaffold00048 6 CH_atr_75 5 5 0.00000000000184879
Brassica carinata Contig324 6 CH_bca_160 5 8 0.00000000000294963
Brassica carinata ChrC08 6 CH_bca_776 3 3 0.00000121391
Brassica carinata ChrB03 6 CH_bca_777 3 3 0.00000121391
Brassica napus C06 6 CH_bna_558 3 3 0.000000687354
Brassica oleracea C6 6 CH_bol_275 3 3 0.000000264429
Camellia sinensis var. sinensis Chr12 6 CH_camsi_215 6 17 0.0000000000075686
Camellia sinensis var. sinensis Chr9 6 CH_camsi_497 4 7 0.000000107457
Cannabis sativa NC_044374.1 6 CH_cansat_303 3 4 0.0000056903
Cannabis sativa NC_044374.1 6 CH_cansat_304 3 4 0.0000056903
Corylus avellana 11 6 CH_cav_160 4 4 0.00000000135355
Chara braunii BFEA01000056 6 CH_cbr_303 2 2 0.000431562
Citrus clementina scaffold_8 6 CH_ccl_41 9 10 3.80219e-23
Citrus clementina scaffold_3 6 CH_ccl_60 8 9 5.2128e-20
Carpinus fangiana Cfa05 6 CH_cfa_213 4 6 0.0000000464887
Cardamine hirsuta Chr2 6 CH_chi_348 3 4 0.00000240755
Carya illinoinensis Chr01 6 CH_cil_466 3 3 0.0000047026
Carya illinoinensis Chr03 6 CH_cil_467 3 3 0.0000047026
Citrullus lanatus CG_Chr02 6 CH_cla_33 5 6 0.0000000000121712
Cucumis melo chr01 6 CH_cme_170 4 12 0.000000217827
Cucumis melo chr11 6 CH_cme_206 3 3 0.00000146867
Capsella rubella scaffold_2 6 CH_cru_86 5 5 0.000000000000169792
Cucumis sativus L. chr2 6 CH_csa_229 3 3 0.00000172471
Cucumis sativus L. chr7 6 CH_csa_262 3 4 0.00000689682
Daucus carota DCARv2_Chr1 6 CH_dca_361 3 4 0.0000199077
Davidia involucrata GWHABJS00000003 6 CH_din_412 3 4 0.0000171031
Durio zibethinus NW_019168037.1 6 CH_dzi_341 3 5 0.0000219006
Erigeron canadensis Conyza_canadensis_scaffold:2 6 CH_eca_344 3 3 0.0000010994
Erigeron canadensis Conyza_canadensis_scaffold:5 6 CH_eca_444 3 5 0.0000109895
Eucalyptus grandis Chr09 6 CH_egr_1126 3 3 0.000100712
Eucalyptus grandis Chr05 6 CH_egr_207 8 10 1.78734e-17
Eucalyptus grandis Chr11 6 CH_egr_487 5 5 0.000000000186491
Eucalyptus grandis Chr10 6 CH_egr_572 5 7 0.00000000390749
Eucalyptus grandis Chr02 6 CH_egr_612 5 8 0.0000000104082
Eucalyptus grandis Chr05 6 CH_egr_659 7 50 0.0000000300931
Fragaria x ananassa Fvb2-4 6 CH_fan_255 4 6 0.000000011661
Fragaria x ananassa Fvb5-4 6 CH_fan_514 3 3 0.00000280209
Fragaria x ananassa Fvb2-2 6 CH_fan_633 3 4 0.0000112059
Fragaria vesca Fvb5 6 CH_fve_230 4 5 0.00000000418512
Fragaria vesca Fvb2 6 CH_fve_310 4 8 0.0000000585409
Glycine max Gm11 6 CH_gma_107 5 5 0.00000000000102403
Glycine max Gm01 6 CH_gma_108 5 5 0.00000000000102403
Helianthus annuus HanXRQChr03 6 CH_han_292 4 4 0.00000000083878
Helianthus annuus HanXRQChr03 6 CH_han_80 7 10 2.43824e-18
Lotus japonicus chr3 6 CH_lja_106 4 4 0.00000000149748
Lonicera japonica GWHAAZE00000007 6 CH_lonja_342 4 4 0.00000000385683
Lonicera japonica GWHAAZE00000009 6 CH_lonja_343 4 4 0.00000000385683
Magnolia biondii Chr10 6 CH_mbi_587 3 3 0.0000034284
Magnolia biondii Chr01 6 CH_mbi_588 3 3 0.0000034284
Malus domestica Chr10 6 CH_mdo_315 4 5 0.00000000396224
Malus domestica Chr08 6 CH_mdo_632 3 3 0.00000245905
Manihot esculenta Chromosome17 6 CH_mes_411 3 3 0.00000637628
Medicago truncatula chr3 6 CH_mtr_1226 3 11 0.000340247
Medicago truncatula chr4 6 CH_mtr_723 3 3 0.00000206626
Medicago truncatula chr5 6 CH_mtr_817 3 4 0.00000826296
Olea europaea scaffold399 6 CH_oeu_195 3 3 0.00000122238
Oryza sativa ssp. japonica chr12 6 CH_osa_463 3 8 0.0000514918
Prunus persica Pp05 6 CH_ppe_134 6 9 0.0000000000000349355
Prunus persica Pp04 6 CH_ppe_326 4 7 0.0000000792401
Pisum sativum chr5LG3 6 CH_psa_161 4 6 0.00000000871479
Pisum sativum chr2LG1 6 CH_psa_346 3 4 0.00000742666
Populus trichocarpa Chr13 6 CH_ptr_465 3 3 0.00000887524
Populus trichocarpa Chr09 6 CH_ptr_466 3 3 0.00000887524
Phaseolus vulgaris Chr05 6 CH_pvu_137 5 7 0.000000000093318
Phaseolus vulgaris Chr11 6 CH_pvu_189 4 4 0.00000000712215
Phaseolus vulgaris Chr02 6 CH_pvu_75 6 6 0.00000000000000261507
Quercus lobata 6 6 CH_qlo_102 10 14 2.42124e-24
Quercus lobata CM012294 6 CH_qlo_1154 3 3 0.0000239265
Quercus lobata CM012294 6 CH_qlo_1155 3 3 0.0000239265
Quercus lobata 12 6 CH_qlo_176 8 10 2.51474e-19
Quercus lobata 11 6 CH_qlo_706 4 4 0.0000000191481
Rosa chinensis RcHm_v2.0_Chr7 6 CH_rch_238 5 6 0.000000000000341285
Rosa chinensis RcHm_v2.0_Chr6 6 CH_rch_710 3 3 0.00000108468
Rosa chinensis RcHm_v2.0_Chr6 6 CH_rch_859 3 5 0.0000108424
Rhododendron simsii chr06 6 CH_rsi_656 3 8 0.0000576527
Salvia bowleyana GWHASIU00000005 6 CH_sbo_136 5 6 0.000000000000248166
Salvia bowleyana GWHASIU00000008 6 CH_sbo_344 3 3 0.000000888078
Salix brachista GWHAAZH00000009 6 CH_sbr_363 3 3 0.00000577168
Simmondsia chinensis GWHAASQ00000018 6 CH_sci_164 3 3 0.000000608964
Sequoiadendron giganteum chr1 6 CH_sgi_1092 5 13 0.000000126743
Sequoiadendron giganteum chr4 6 CH_sgi_1913 3 3 0.0000741335
Sequoiadendron giganteum chr2 6 CH_sgi_471 6 7 0.000000000000777657
Sequoiadendron giganteum chr6 6 CH_sgi_62 15 27 1.86071e-33
Solanum lycopersicum SL4.0ch10 6 CH_sly_376 3 3 0.000000852661
Selaginella moellendorffii scaffold_0 6 CH_smo_176 3 5 0.0000215642
Solanum pennellii Spenn-ch10 6 CH_spe_364 3 4 0.00000142427
Solanum tuberosum ST4.03ch10 6 CH_stu_758 3 15 0.000295101
Selenicereus undatus Scaffold_33678 6 CH_sun_27 5 7 0.00000000000878708
Trochodendron aralioides group14 6 CH_tar_117 5 6 0.0000000000574325
Trochodendron aralioides group11 6 CH_tar_280 4 6 0.000000199158
Trochodendron aralioides group10 6 CH_tar_433 3 3 0.0000177125
Trochodendron aralioides group5 6 CH_tar_434 3 3 0.0000177125
Trochodendron aralioides group14 6 CH_tar_70 6 8 0.000000000000184959
Tarenaya hassleriana NW_010965373.1 6 CH_tha_159 3 3 0.00000409817
Tarenaya hassleriana NW_010965372.1 6 CH_tha_69 4 4 0.00000000186072
Trifolium pratense Tp57577_TGAC_v2_LG2 6 CH_tpr_216 4 6 0.0000000944809
Trifolium pratense Tp57577_TGAC_v2_LG7 6 CH_tpr_371 3 3 0.00000979883
Tripterygium wilfordii NC_052242.1 6 CH_twi_263 3 3 0.00000531507
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_30 7 7 1.61462e-18
Vigna mungo CM024076.1 6 CH_vmu_217 3 3 0.00000137779
Vanilla planifolia CM028153.1 6 CH_vpl_24 6 7 0.00000000000000104169
Vanilla planifolia CM028159.1 6 CH_vpl_241 3 3 0.00000298096
Vitis vinifera chr2 6 CH_vvi_432 3 3 0.0000133652
Vitis vinifera chr3 6 CH_vvi_79 7 9 9.35859e-17

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001