Functional clusters
Information
- Type InterPro
- Description Protein DMP
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica carinata | ChrC06 | 5 | CH_bca_1073 | 3 | 4 | 0.0000123212 |
| Brassica carinata | ChrC09 | 5 | CH_bca_1624 | 3 | 9 | 0.000258442 |
| Brassica oleracea | C1 | 5 | CH_bol_628 | 3 | 10 | 0.000107563 |
| Corylus avellana | 2 | 5 | CH_cav_314 | 3 | 3 | 0.00000193988 |
| Corylus avellana | 1 | 5 | CH_cav_377 | 3 | 4 | 0.00000775723 |
| Carpinus fangiana | Cfa02 | 5 | CH_cfa_378 | 3 | 4 | 0.0000392135 |
| Carpinus fangiana | Cfa06 | 5 | CH_cfa_40 | 8 | 11 | 9.35174e-20 |
| Cardamine hirsuta | Chr3 | 5 | CH_chi_199 | 4 | 6 | 0.00000000735292 |
| Carya illinoinensis | Chr02 | 5 | CH_cil_142 | 5 | 5 | 0.000000000000685138 |
| Cucumis sativus L. | chr3 | 5 | CH_csa_494 | 2 | 2 | 0.000834759 |
| Davidia involucrata | GWHABJS00000002 | 5 | CH_din_170 | 4 | 5 | 0.000000001878 |
| Eucalyptus grandis | Chr08 | 5 | CH_egr_527 | 4 | 4 | 0.000000000821052 |
| Eucalyptus grandis | Chr02 | 5 | CH_egr_873 | 3 | 3 | 0.00000233795 |
| Fragaria vesca | Fvb6 | 5 | CH_fve_111 | 5 | 8 | 0.00000000000127435 |
| Hydrangea macrophylla | Hma1.2p1_0257F.1 | 5 | CH_hma_203 | 3 | 4 | 0.00000414544 |
| Oryza sativa ssp. japonica | chr01 | 5 | CH_osa_317 | 3 | 3 | 0.00000119657 |
| Punica granatum | NC_045127.1 | 5 | CH_pgr_151 | 4 | 4 | 0.00000000133066 |
| Prunus persica | Pp01 | 5 | CH_ppe_234 | 4 | 4 | 0.00000000061649 |
| Papaver somniferum | NC_039362.1 | 5 | CH_pso_650 | 3 | 12 | 0.00000334891 |
| Quercus lobata | 3 | 5 | CH_qlo_1020 | 3 | 3 | 0.00000326271 |
| Quercus lobata | 6 | 5 | CH_qlo_124 | 8 | 9 | 1.21335e-22 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 5 | CH_rch_1265 | 3 | 11 | 0.000266984 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 5 | CH_rch_163 | 6 | 8 | 7.84873e-16 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_632 | 4 | 13 | 0.000000322794 |
| Rhododendron simsii | chr02 | 5 | CH_rsi_208 | 5 | 6 | 0.00000000000907172 |
| Rhododendron simsii | chr10 | 5 | CH_rsi_403 | 4 | 7 | 0.000000109236 |
| Sechium edule | LG12 | 5 | CH_sed_206 | 3 | 4 | 0.00000106872 |
| Sequoiadendron giganteum | chr5 | 5 | CH_sgi_1196 | 3 | 3 | 0.00000042718 |
| Sequoiadendron giganteum | chr11 | 5 | CH_sgi_292 | 6 | 9 | 1.08884e-16 |
| Selaginella moellendorffii | scaffold_7 | 5 | CH_smo_220 | 2 | 2 | 0.0000933707 |
| Vaccinium macrocarpon | chr4_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_696 | 2 | 2 | 0.000557543 |
| Vanilla planifolia | CM028162.1 | 5 | CH_vpl_179 | 5 | 47 | 0.00000067763 |
| Brassica carinata | ChrC06 | 6 | CH_bca_1073 | 3 | 4 | 0.0000123212 |
| Brassica carinata | ChrC09 | 6 | CH_bca_1624 | 3 | 9 | 0.000258442 |
| Brassica oleracea | C1 | 6 | CH_bol_628 | 3 | 10 | 0.000107563 |
| Corylus avellana | 2 | 6 | CH_cav_314 | 3 | 3 | 0.00000193988 |
| Corylus avellana | 1 | 6 | CH_cav_377 | 3 | 4 | 0.00000775723 |
| Carpinus fangiana | Cfa02 | 6 | CH_cfa_378 | 3 | 4 | 0.0000392135 |
| Carpinus fangiana | Cfa06 | 6 | CH_cfa_40 | 8 | 11 | 9.35174e-20 |
| Cardamine hirsuta | Chr3 | 6 | CH_chi_199 | 4 | 6 | 0.00000000735292 |
| Carya illinoinensis | Chr02 | 6 | CH_cil_142 | 5 | 5 | 0.000000000000685138 |
| Cucumis melo | chr06 | 6 | CH_cme_185 | 3 | 3 | 0.000000373844 |
| Cucumis sativus L. | chr3 | 6 | CH_csa_494 | 2 | 2 | 0.000834759 |
| Davidia involucrata | GWHABJS00000002 | 6 | CH_din_170 | 4 | 5 | 0.000000001878 |
| Eucalyptus grandis | Chr08 | 6 | CH_egr_527 | 4 | 4 | 0.000000000821052 |
| Eucalyptus grandis | Chr02 | 6 | CH_egr_873 | 3 | 3 | 0.00000233795 |
| Fragaria x ananassa | Fvb6-4 | 6 | CH_fan_118 | 5 | 6 | 0.00000000000229898 |
| Fragaria x ananassa | Fvb6-3 | 6 | CH_fan_661 | 3 | 4 | 0.0000159582 |
| Fragaria x ananassa | Fvb6-1 | 6 | CH_fan_662 | 3 | 4 | 0.0000159582 |
| Fragaria vesca | Fvb6 | 6 | CH_fve_111 | 5 | 8 | 0.00000000000127435 |
| Hydrangea macrophylla | Hma1.2p1_0257F.1 | 6 | CH_hma_203 | 3 | 4 | 0.00000414544 |
| Oryza sativa ssp. japonica | chr01 | 6 | CH_osa_317 | 3 | 3 | 0.00000119657 |
| Punica granatum | NC_045127.1 | 6 | CH_pgr_151 | 4 | 4 | 0.00000000133066 |
| Prunus persica | Pp01 | 6 | CH_ppe_234 | 4 | 4 | 0.00000000061649 |
| Papaver somniferum | NC_039362.1 | 6 | CH_pso_650 | 3 | 12 | 0.00000334891 |
| Quercus lobata | 3 | 6 | CH_qlo_1020 | 3 | 3 | 0.00000326271 |
| Quercus lobata | 6 | 6 | CH_qlo_124 | 8 | 9 | 1.21335e-22 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 6 | CH_rch_1265 | 3 | 11 | 0.000266984 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 6 | CH_rch_163 | 6 | 8 | 7.84873e-16 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_632 | 4 | 13 | 0.000000322794 |
| Rhododendron simsii | chr02 | 6 | CH_rsi_208 | 5 | 6 | 0.00000000000907172 |
| Rhododendron simsii | chr10 | 6 | CH_rsi_403 | 4 | 7 | 0.000000109236 |
| Sechium edule | LG12 | 6 | CH_sed_206 | 3 | 4 | 0.00000106872 |
| Sequoiadendron giganteum | chr5 | 6 | CH_sgi_1196 | 3 | 3 | 0.00000042718 |
| Sequoiadendron giganteum | chr11 | 6 | CH_sgi_292 | 6 | 9 | 1.08884e-16 |
| Selaginella moellendorffii | scaffold_7 | 6 | CH_smo_220 | 2 | 2 | 0.0000933707 |
| Vaccinium macrocarpon | chr4_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_696 | 2 | 2 | 0.000557543 |
| Vanilla planifolia | CM028162.1 | 6 | CH_vpl_179 | 5 | 47 | 0.00000067763 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |