Functional clusters

Information

  • Type InterPro
  • Description Phytochelatin synthase, N-terminal catalytic domain

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr5 5 CH_acertr_582 2 2 0.000070497
Brassica carinata ChrC04 5 CH_bca_2028 2 2 0.000769551
Brassica napus C09 5 CH_bna_1505 2 2 0.000835275
Brassica oleracea C9 5 CH_bol_909 2 3 0.000980536
Brassica rapa A09 5 CH_bra_520 2 2 0.000429314
Beta vulgaris Chr7_EL10_PGA_scaffold5 5 CH_bvu_152 3 4 0.0000000411268
Camellia sinensis var. sinensis Chr3 5 CH_camsi_303 4 6 0.000000000546595
Cannabis sativa NC_044373.1 5 CH_cansat_462 2 2 0.000196993
Cicer arietinum L. Ca_LG3_v3 5 CH_car_63 4 30 0.0000000387262
Citrus clementina scaffold_3 5 CH_ccl_177 4 7 0.0000000000579595
Carpinus fangiana Cfa01 5 CH_cfa_465 2 3 0.000227195
Cardamine hirsuta Chr6 5 CH_chi_605 2 2 0.000207361
Carya illinoinensis Chr03 5 CH_cil_567 2 2 0.0000619828
Carica papaya supercontig_165 5 CH_cpa_318 2 2 0.0000950661
Chenopodium quinoa C_Quinoa_Scaffold_1710 5 CH_cqu_298 3 3 0.0000000673536
Chenopodium quinoa C_Quinoa_Scaffold_2773 5 CH_cqu_356 3 4 0.000000269394
Durio zibethinus NW_019167893.1 5 CH_dzi_381 2 2 0.0000463489
Eucalyptus grandis Chr08 5 CH_egr_361 4 4 0.000000000000601504
Eutrema salsugineum scaffold_17 5 CH_esa_407 2 2 0.00022845
Fragaria vesca Fvb2 5 CH_fve_328 3 7 0.00000018218
Glycine max Gm03 5 CH_gma_638 2 2 0.000113867
Lupinus albus Lalb_Chr20 5 CH_lal_398 2 2 0.0000524824
Lotus japonicus chr1 5 CH_lja_194 3 3 0.000000153406
Lonicera japonica GWHAAZE00000002 5 CH_lonja_431 3 6 0.000000107589
Malus domestica Chr05 5 CH_mdo_969 2 2 0.000113763
Medicago truncatula chr7 5 CH_mtr_916 2 2 0.0000410863
Olea europaea chr13 5 CH_oeu_588 2 3 0.000480389
Populus trichocarpa Chr14 5 CH_ptr_537 2 2 0.0000578001
Phaseolus vulgaris Chr01 5 CH_pvu_451 2 2 0.0000734727
Quercus lobata 9 5 CH_qlo_1246 2 2 0.0000516289
Rosa chinensis RcHm_v2.0_Chr6 5 CH_rch_677 3 13 0.000000681661
Rhododendron simsii chr13 5 CH_rsi_760 2 3 0.000193586
Salix brachista GWHAAZH00000014 5 CH_sbr_460 2 2 0.000063014
Sechium edule LG07 5 CH_sed_325 2 2 0.0000713419
Schrenkiella parvula ch2-4 5 CH_spa_288 2 2 0.000236202
Selenicereus undatus Scaffold_19641 5 CH_sun_247 2 3 0.000217984
Trochodendron aralioides group1 5 CH_tar_180 4 14 0.00000000974082
Theobroma cacao Chromosome_1 5 CH_tca_528 2 2 0.0000732386
Trifolium pratense Tp57577_TGAC_v2_LG6 5 CH_tpr_229 3 3 0.000000171909
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_446 2 2 0.0000929238
Vigna mungo CM024070.1 5 CH_vmu_336 2 2 0.0000646141
Acer truncatum chr5 6 CH_acertr_582 2 2 0.000070497
Brassica carinata ChrC04 6 CH_bca_2028 2 2 0.000769551
Brassica napus C09 6 CH_bna_1505 2 2 0.000835275
Brassica oleracea C9 6 CH_bol_909 2 3 0.000980536
Brassica rapa A09 6 CH_bra_520 2 2 0.000429314
Beta vulgaris Chr7_EL10_PGA_scaffold5 6 CH_bvu_152 3 4 0.0000000411268
Camellia sinensis var. sinensis Chr3 6 CH_camsi_303 4 6 0.000000000546595
Cannabis sativa NC_044373.1 6 CH_cansat_462 2 2 0.000196993
Cicer arietinum L. Ca_LG3_v3 6 CH_car_63 4 30 0.0000000387262
Citrus clementina scaffold_3 6 CH_ccl_177 4 7 0.0000000000579595
Carpinus fangiana Cfa01 6 CH_cfa_465 2 3 0.000227195
Cardamine hirsuta Chr6 6 CH_chi_605 2 2 0.000207361
Carya illinoinensis Chr03 6 CH_cil_567 2 2 0.0000619828
Cucumis melo chr05 6 CH_cme_466 2 2 0.000667111
Carica papaya supercontig_165 6 CH_cpa_318 2 2 0.0000950661
Chenopodium quinoa C_Quinoa_Scaffold_1710 6 CH_cqu_298 3 3 0.0000000673536
Chenopodium quinoa C_Quinoa_Scaffold_2773 6 CH_cqu_356 3 4 0.000000269394
Durio zibethinus NW_019167893.1 6 CH_dzi_381 2 2 0.0000463489
Eucalyptus grandis Chr08 6 CH_egr_361 4 4 0.000000000000601504
Eutrema salsugineum scaffold_17 6 CH_esa_407 2 2 0.00022845
Fragaria x ananassa Fvb2-2 6 CH_fan_959 2 2 0.000277554
Fragaria x ananassa Fvb2-1 6 CH_fan_960 2 2 0.000277554
Fragaria vesca Fvb2 6 CH_fve_328 3 7 0.00000018218
Glycine max Gm03 6 CH_gma_638 2 2 0.000113867
Lupinus albus Lalb_Chr20 6 CH_lal_398 2 2 0.0000524824
Lotus japonicus chr1 6 CH_lja_194 3 3 0.000000153406
Lonicera japonica GWHAAZE00000002 6 CH_lonja_431 3 6 0.000000107589
Malus domestica Chr05 6 CH_mdo_969 2 2 0.000113763
Medicago truncatula chr7 6 CH_mtr_916 2 2 0.0000410863
Olea europaea chr13 6 CH_oeu_588 2 3 0.000480389
Populus trichocarpa Chr14 6 CH_ptr_537 2 2 0.0000578001
Phaseolus vulgaris Chr01 6 CH_pvu_451 2 2 0.0000734727
Quercus lobata 9 6 CH_qlo_1246 2 2 0.0000516289
Rosa chinensis RcHm_v2.0_Chr6 6 CH_rch_677 3 13 0.000000681661
Rhododendron simsii chr13 6 CH_rsi_760 2 3 0.000193586
Salix brachista GWHAAZH00000014 6 CH_sbr_460 2 2 0.000063014
Sechium edule LG07 6 CH_sed_325 2 2 0.0000713419
Schrenkiella parvula ch2-4 6 CH_spa_288 2 2 0.000236202
Selenicereus undatus Scaffold_19641 6 CH_sun_247 2 3 0.000217984
Trochodendron aralioides group1 6 CH_tar_180 4 14 0.00000000974082
Theobroma cacao Chromosome_1 6 CH_tca_528 2 2 0.0000732386
Trifolium pratense Tp57577_TGAC_v2_LG6 6 CH_tpr_229 3 3 0.000000171909
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_446 2 2 0.0000929238
Vigna mungo CM024070.1 6 CH_vmu_336 2 2 0.0000646141

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001