Functional clusters
Information
- Type InterPro
- Description Domain of unknown function DUF569
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group15 | 5 | CH_ach_603 | 2 | 2 | 0.000814819 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_10 | 5 | CH_amhyb_383 | 2 | 2 | 0.000505051 |
| Arabidopsis thaliana | Chr1 | 5 | CH_ath_558 | 2 | 2 | 0.000429738 |
| Brassica napus | A07 | 5 | CH_bna_610 | 3 | 3 | 0.0000013437 |
| Brassica napus | A07 | 5 | CH_bna_792 | 4 | 31 | 0.00000898314 |
| Brassica napus | C06 | 5 | CH_bna_829 | 3 | 5 | 0.0000134324 |
| Brassica oleracea | C6 | 5 | CH_bol_361 | 3 | 4 | 0.00000183312 |
| Brassica rapa | A07 | 5 | CH_bra_207 | 3 | 3 | 0.00000100635 |
| Brassica rapa | A07 | 5 | CH_bra_208 | 3 | 3 | 0.00000100635 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 5 | CH_bvu_198 | 4 | 32 | 0.000000305506 |
| Cannabis sativa | NC_044379.1 | 5 | CH_cansat_524 | 2 | 2 | 0.000393985 |
| Cicer arietinum L. | Ca_LG7_v3 | 5 | CH_car_407 | 2 | 2 | 0.000778301 |
| Cicer arietinum L. | Ca_LG2_v3 | 5 | CH_car_408 | 2 | 2 | 0.000778301 |
| Corylus avellana | 9 | 5 | CH_cav_728 | 2 | 2 | 0.000460017 |
| Coffea canephora | chr7 | 5 | CH_ccan_443 | 2 | 7 | 0.00007666 |
| Carica papaya | supercontig_14 | 5 | CH_cpa_317 | 2 | 2 | 0.0000950661 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1695 | 5 | CH_cqu_160 | 4 | 4 | 0.0000000000670217 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2048 | 5 | CH_cqu_192 | 4 | 5 | 0.000000000335062 |
| Davidia involucrata | GWHABJS00000014 | 5 | CH_din_806 | 2 | 2 | 0.000750188 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 5 | CH_eca_821 | 2 | 2 | 0.000673083 |
| Fragaria vesca | Fvb6 | 5 | CH_fve_638 | 2 | 2 | 0.00017673 |
| Helianthus annuus | HanXRQChr09 | 5 | CH_han_722 | 3 | 9 | 0.000015795 |
| Magnolia biondii | Chr01 | 5 | CH_mbi_742 | 2 | 2 | 0.0000485661 |
| Oryza sativa ssp. japonica | chr06 | 5 | CH_osa_369 | 3 | 7 | 0.000005123 |
| Prunus persica | Pp03 | 5 | CH_ppe_691 | 2 | 2 | 0.000223789 |
| Pisum sativum | chr2LG1 | 5 | CH_psa_676 | 2 | 2 | 0.000521635 |
| Quercus lobata | CM012294 | 5 | CH_qlo_179 | 7 | 13 | 3.07065e-19 |
| Quercus lobata | 3 | 5 | CH_qlo_886 | 3 | 3 | 0.00000047981 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_461 | 3 | 3 | 0.00000000953562 |
| Rhododendron simsii | chr12 | 5 | CH_rsi_283 | 4 | 5 | 0.00000000084639 |
| Rhododendron simsii | chr10 | 5 | CH_rsi_746 | 3 | 12 | 0.000164609 |
| Salix brachista | GWHAAZH00000017 | 5 | CH_sbr_660 | 2 | 2 | 0.00063014 |
| Sequoiadendron giganteum | chr10 | 5 | CH_sgi_790 | 3 | 3 | 0.00000000355983 |
| Solanum pennellii | Spenn-ch05 | 5 | CH_spe_906 | 2 | 2 | 0.00093406 |
| Solanum pennellii | Spenn-ch02 | 5 | CH_spe_907 | 2 | 2 | 0.00093406 |
| Selenicereus undatus | Scaffold_33677 | 5 | CH_sun_79 | 3 | 3 | 0.0000000792034 |
| Tarenaya hassleriana | NW_010966822.1 | 5 | CH_tha_299 | 2 | 2 | 0.000419082 |
| Vaccinium macrocarpon | chr12_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_791 | 2 | 2 | 0.000929238 |
| Vaccinium macrocarpon | chr1_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_792 | 2 | 2 | 0.000929238 |
| Vigna mungo | CM024069.1 | 5 | CH_vmu_594 | 2 | 2 | 0.000646141 |
| Zea mays | 6 | 5 | CH_zma_148 | 4 | 6 | 0.0000000359787 |
| Zea mays | 9 | 5 | CH_zma_216 | 4 | 12 | 0.00000118464 |
| Actinidia chinensis | Lachesis_group15 | 6 | CH_ach_603 | 2 | 2 | 0.000814819 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_10 | 6 | CH_amhyb_383 | 2 | 2 | 0.000505051 |
| Arabidopsis thaliana | Chr1 | 6 | CH_ath_558 | 2 | 2 | 0.000429738 |
| Brassica napus | A07 | 6 | CH_bna_610 | 3 | 3 | 0.0000013437 |
| Brassica napus | A07 | 6 | CH_bna_792 | 4 | 31 | 0.00000898314 |
| Brassica napus | C06 | 6 | CH_bna_829 | 3 | 5 | 0.0000134324 |
| Brassica oleracea | C6 | 6 | CH_bol_361 | 3 | 4 | 0.00000183312 |
| Brassica rapa | A07 | 6 | CH_bra_207 | 3 | 3 | 0.00000100635 |
| Brassica rapa | A07 | 6 | CH_bra_208 | 3 | 3 | 0.00000100635 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 6 | CH_bvu_198 | 4 | 32 | 0.000000305506 |
| Cannabis sativa | NC_044379.1 | 6 | CH_cansat_524 | 2 | 2 | 0.000393985 |
| Cicer arietinum L. | Ca_LG7_v3 | 6 | CH_car_407 | 2 | 2 | 0.000778301 |
| Cicer arietinum L. | Ca_LG2_v3 | 6 | CH_car_408 | 2 | 2 | 0.000778301 |
| Corylus avellana | 9 | 6 | CH_cav_728 | 2 | 2 | 0.000460017 |
| Coffea canephora | chr7 | 6 | CH_ccan_443 | 2 | 7 | 0.00007666 |
| Carica papaya | supercontig_14 | 6 | CH_cpa_317 | 2 | 2 | 0.0000950661 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1695 | 6 | CH_cqu_160 | 4 | 4 | 0.0000000000670217 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2048 | 6 | CH_cqu_192 | 4 | 5 | 0.000000000335062 |
| Davidia involucrata | GWHABJS00000014 | 6 | CH_din_806 | 2 | 2 | 0.000750188 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 6 | CH_eca_821 | 2 | 2 | 0.000673083 |
| Fragaria vesca | Fvb6 | 6 | CH_fve_638 | 2 | 2 | 0.00017673 |
| Helianthus annuus | HanXRQChr09 | 6 | CH_han_722 | 3 | 9 | 0.000015795 |
| Magnolia biondii | Chr01 | 6 | CH_mbi_742 | 2 | 2 | 0.0000485661 |
| Oryza sativa ssp. japonica | chr06 | 6 | CH_osa_369 | 3 | 7 | 0.000005123 |
| Prunus persica | Pp03 | 6 | CH_ppe_691 | 2 | 2 | 0.000223789 |
| Pisum sativum | chr2LG1 | 6 | CH_psa_676 | 2 | 2 | 0.000521635 |
| Quercus lobata | CM012294 | 6 | CH_qlo_179 | 7 | 13 | 3.07065e-19 |
| Quercus lobata | 3 | 6 | CH_qlo_886 | 3 | 3 | 0.00000047981 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_461 | 3 | 3 | 0.00000000953562 |
| Rhododendron simsii | chr12 | 6 | CH_rsi_283 | 4 | 5 | 0.00000000084639 |
| Rhododendron simsii | chr10 | 6 | CH_rsi_746 | 3 | 12 | 0.000164609 |
| Salix brachista | GWHAAZH00000017 | 6 | CH_sbr_660 | 2 | 2 | 0.00063014 |
| Sequoiadendron giganteum | chr10 | 6 | CH_sgi_790 | 3 | 3 | 0.00000000355983 |
| Solanum pennellii | Spenn-ch05 | 6 | CH_spe_906 | 2 | 2 | 0.00093406 |
| Solanum pennellii | Spenn-ch02 | 6 | CH_spe_907 | 2 | 2 | 0.00093406 |
| Selenicereus undatus | Scaffold_33677 | 6 | CH_sun_79 | 3 | 3 | 0.0000000792034 |
| Tarenaya hassleriana | NW_010966822.1 | 6 | CH_tha_299 | 2 | 2 | 0.000419082 |
| Vaccinium macrocarpon | chr12_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_791 | 2 | 2 | 0.000929238 |
| Vaccinium macrocarpon | chr1_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_792 | 2 | 2 | 0.000929238 |
| Vigna mungo | CM024069.1 | 6 | CH_vmu_594 | 2 | 2 | 0.000646141 |
| Zea mays | 6 | 6 | CH_zma_148 | 4 | 6 | 0.0000000359787 |
| Zea mays | 9 | 6 | CH_zma_216 | 4 | 12 | 0.00000118464 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |