Functional clusters
Information
- Type InterPro
- Description Protein of unknown function DUF594
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-9 | 5 | CH_aar_158 | 3 | 6 | 0.000000249679 |
| Acer truncatum | chr1 | 5 | CH_acertr_26 | 9 | 34 | 1.09576e-18 |
| Arabidopsis lyrata | scaffold_8 | 5 | CH_aly_27 | 8 | 22 | 9.06167e-20 |
| Brassica carinata | ChrC03 | 5 | CH_bca_170 | 5 | 8 | 0.00000000000465706 |
| Brassica carinata | ChrC03 | 5 | CH_bca_811 | 3 | 3 | 0.0000015765 |
| Brassica napus | C02 | 5 | CH_bna_455 | 3 | 3 | 0.000000113698 |
| Brassica oleracea | C2 | 5 | CH_bol_265 | 3 | 3 | 0.000000192312 |
| Brassica oleracea | C2 | 5 | CH_bol_322 | 3 | 4 | 0.000000769171 |
| Camellia sinensis var. sinensis | Chr5 | 5 | CH_camsi_789 | 3 | 4 | 0.00000857677 |
| Cannabis sativa | NC_044371.1 | 5 | CH_cansat_196 | 4 | 7 | 0.0000000908693 |
| Cannabis sativa | NC_044372.1 | 5 | CH_cansat_82 | 7 | 36 | 0.00000000000166902 |
| Corylus avellana | 7 | 5 | CH_cav_167 | 4 | 4 | 0.00000000246099 |
| Citrus clementina | scaffold_7 | 5 | CH_ccl_43 | 9 | 12 | 1.07373e-22 |
| Citrus clementina | scaffold_2 | 5 | CH_ccl_438 | 3 | 3 | 0.0000115072 |
| Carpinus fangiana | Cfa01 | 5 | CH_cfa_44 | 8 | 15 | 2.5296e-18 |
| Cardamine hirsuta | Chr6 | 5 | CH_chi_37 | 8 | 15 | 6.87607e-22 |
| Carya illinoinensis | Chr15 | 5 | CH_cil_125 | 5 | 7 | 0.000000000000130179 |
| Carica papaya | supercontig_25 | 5 | CH_cpa_200 | 3 | 4 | 0.00000189762 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1516 | 5 | CH_cqu_615 | 3 | 7 | 0.0000336833 |
| Daucus carota | DCARv2_Chr2 | 5 | CH_dca_60 | 5 | 6 | 0.000000000000958162 |
| Durio zibethinus | NW_019167982.1 | 5 | CH_dzi_135 | 6 | 39 | 0.00000000156663 |
| Durio zibethinus | NW_019168048.1 | 5 | CH_dzi_342 | 3 | 4 | 0.000022819 |
| Erigeron canadensis | Conyza_canadensis_scaffold:6 | 5 | CH_eca_17 | 8 | 12 | 1.71503e-22 |
| Eucalyptus grandis | Chr04 | 5 | CH_egr_16 | 25 | 37 | 1.59091e-50 |
| Eucalyptus grandis | Chr10 | 5 | CH_egr_462 | 7 | 12 | 0.0000000000787498 |
| Eutrema salsugineum | scaffold_20 | 5 | CH_esa_69 | 5 | 9 | 0.000000000000667191 |
| Gossypium hirsutum | A02 | 5 | CH_ghi_705 | 3 | 4 | 0.00000983686 |
| Glycine max | Gm20 | 5 | CH_gma_672 | 3 | 23 | 0.000133746 |
| Gossypium raimondii | Chr05 | 5 | CH_gra_172 | 4 | 4 | 0.000000000462748 |
| Manihot esculenta | Chromosome11 | 5 | CH_mes_250 | 4 | 10 | 0.0000000100342 |
| Medicago truncatula | chr1 | 5 | CH_mtr_1279 | 2 | 2 | 0.000410863 |
| Punica granatum | NC_045131.1 | 5 | CH_pgr_307 | 4 | 20 | 0.00000302651 |
| Populus trichocarpa | Chr15 | 5 | CH_ptr_22 | 16 | 70 | 4.84559e-31 |
| Populus trichocarpa | Chr06 | 5 | CH_ptr_83 | 8 | 16 | 1.20737e-16 |
| Quercus lobata | 10 | 5 | CH_qlo_1516 | 3 | 3 | 0.000200385 |
| Quercus lobata | 3 | 5 | CH_qlo_443 | 9 | 51 | 0.0000000000101236 |
| Quercus lobata | 5 | 5 | CH_qlo_473 | 6 | 8 | 0.0000000000252308 |
| Quercus lobata | 12 | 5 | CH_qlo_637 | 6 | 15 | 0.00000000446606 |
| Quercus lobata | CM012294 | 5 | CH_qlo_893 | 7 | 60 | 0.000000518538 |
| Rhododendron simsii | chr07 | 5 | CH_rsi_44 | 14 | 45 | 9.70104e-26 |
| Salix brachista | GWHAAZH00000006 | 5 | CH_sbr_168 | 5 | 9 | 0.000000000978007 |
| Salix brachista | GWHAAZH00000015 | 5 | CH_sbr_60 | 9 | 31 | 2.19669e-17 |
| Sechium edule | LG08 | 5 | CH_sed_162 | 3 | 3 | 0.000000152696 |
| Sequoiadendron giganteum | chr4 | 5 | CH_sgi_2439 | 2 | 2 | 0.000487151 |
| Schrenkiella parvula | ch2-4 | 5 | CH_spa_235 | 2 | 2 | 0.000078734 |
| Trochodendron aralioides | group1 | 5 | CH_tar_483 | 3 | 9 | 0.0000544388 |
| Theobroma cacao | Chromosome_6 | 5 | CH_tca_224 | 6 | 43 | 0.00000000228563 |
| Theobroma cacao | Chromosome_2 | 5 | CH_tca_272 | 4 | 6 | 0.0000000321525 |
| Tarenaya hassleriana | NW_010962392.1 | 5 | CH_tha_118 | 3 | 4 | 0.000000292701 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_304 | 3 | 4 | 0.0000029008 |
| Vitis vinifera | chr9 | 5 | CH_vvi_474 | 3 | 5 | 0.000048561 |
| Vitis vinifera | chr19 | 5 | CH_vvi_658 | 3 | 9 | 0.000407245 |
| Zea mays | 7 | 5 | CH_zma_97 | 8 | 80 | 0.000000000608066 |
| Aethionema arabicum | LG-9 | 6 | CH_aar_158 | 3 | 6 | 0.000000249679 |
| Acer truncatum | chr1 | 6 | CH_acertr_26 | 9 | 34 | 1.09576e-18 |
| Arabidopsis lyrata | scaffold_8 | 6 | CH_aly_27 | 8 | 22 | 9.06167e-20 |
| Brassica carinata | ChrC03 | 6 | CH_bca_170 | 5 | 8 | 0.00000000000465706 |
| Brassica carinata | ChrC03 | 6 | CH_bca_811 | 3 | 3 | 0.0000015765 |
| Brassica napus | C02 | 6 | CH_bna_455 | 3 | 3 | 0.000000113698 |
| Brassica oleracea | C2 | 6 | CH_bol_265 | 3 | 3 | 0.000000192312 |
| Brassica oleracea | C2 | 6 | CH_bol_322 | 3 | 4 | 0.000000769171 |
| Camellia sinensis var. sinensis | Chr5 | 6 | CH_camsi_789 | 3 | 4 | 0.00000857677 |
| Cannabis sativa | NC_044371.1 | 6 | CH_cansat_196 | 4 | 7 | 0.0000000908693 |
| Cannabis sativa | NC_044372.1 | 6 | CH_cansat_82 | 7 | 36 | 0.00000000000166902 |
| Corylus avellana | 7 | 6 | CH_cav_167 | 4 | 4 | 0.00000000246099 |
| Citrus clementina | scaffold_7 | 6 | CH_ccl_43 | 9 | 12 | 1.07373e-22 |
| Citrus clementina | scaffold_2 | 6 | CH_ccl_438 | 3 | 3 | 0.0000115072 |
| Carpinus fangiana | Cfa01 | 6 | CH_cfa_44 | 8 | 15 | 2.5296e-18 |
| Cardamine hirsuta | Chr6 | 6 | CH_chi_37 | 8 | 15 | 6.87607e-22 |
| Carya illinoinensis | Chr15 | 6 | CH_cil_125 | 5 | 7 | 0.000000000000130179 |
| Carica papaya | supercontig_25 | 6 | CH_cpa_200 | 3 | 4 | 0.00000189762 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1516 | 6 | CH_cqu_615 | 3 | 7 | 0.0000336833 |
| Daucus carota | DCARv2_Chr2 | 6 | CH_dca_60 | 5 | 6 | 0.000000000000958162 |
| Durio zibethinus | NW_019167982.1 | 6 | CH_dzi_135 | 6 | 39 | 0.00000000156663 |
| Durio zibethinus | NW_019168048.1 | 6 | CH_dzi_342 | 3 | 4 | 0.000022819 |
| Erigeron canadensis | Conyza_canadensis_scaffold:6 | 6 | CH_eca_17 | 8 | 12 | 1.71503e-22 |
| Eucalyptus grandis | Chr04 | 6 | CH_egr_16 | 25 | 37 | 1.59091e-50 |
| Eucalyptus grandis | Chr10 | 6 | CH_egr_462 | 7 | 12 | 0.0000000000787498 |
| Eutrema salsugineum | scaffold_20 | 6 | CH_esa_69 | 5 | 9 | 0.000000000000667191 |
| Gossypium hirsutum | A02 | 6 | CH_ghi_705 | 3 | 4 | 0.00000983686 |
| Glycine max | Gm20 | 6 | CH_gma_672 | 3 | 23 | 0.000133746 |
| Gossypium raimondii | Chr05 | 6 | CH_gra_172 | 4 | 4 | 0.000000000462748 |
| Manihot esculenta | Chromosome11 | 6 | CH_mes_250 | 4 | 10 | 0.0000000100342 |
| Medicago truncatula | chr1 | 6 | CH_mtr_1279 | 2 | 2 | 0.000410863 |
| Punica granatum | NC_045131.1 | 6 | CH_pgr_307 | 4 | 20 | 0.00000302651 |
| Populus trichocarpa | Chr15 | 6 | CH_ptr_22 | 16 | 70 | 4.84559e-31 |
| Populus trichocarpa | Chr06 | 6 | CH_ptr_83 | 8 | 16 | 1.20737e-16 |
| Quercus lobata | 10 | 6 | CH_qlo_1516 | 3 | 3 | 0.000200385 |
| Quercus lobata | 3 | 6 | CH_qlo_443 | 9 | 51 | 0.0000000000101236 |
| Quercus lobata | 5 | 6 | CH_qlo_473 | 6 | 8 | 0.0000000000252308 |
| Quercus lobata | 12 | 6 | CH_qlo_637 | 6 | 15 | 0.00000000446606 |
| Quercus lobata | CM012294 | 6 | CH_qlo_893 | 7 | 60 | 0.000000518538 |
| Rhododendron simsii | chr07 | 6 | CH_rsi_44 | 14 | 45 | 9.70104e-26 |
| Salix brachista | GWHAAZH00000006 | 6 | CH_sbr_168 | 5 | 9 | 0.000000000978007 |
| Salix brachista | GWHAAZH00000015 | 6 | CH_sbr_60 | 9 | 31 | 2.19669e-17 |
| Sechium edule | LG08 | 6 | CH_sed_162 | 3 | 3 | 0.000000152696 |
| Sequoiadendron giganteum | chr4 | 6 | CH_sgi_2439 | 2 | 2 | 0.000487151 |
| Schrenkiella parvula | ch2-4 | 6 | CH_spa_235 | 2 | 2 | 0.000078734 |
| Trochodendron aralioides | group1 | 6 | CH_tar_483 | 3 | 9 | 0.0000544388 |
| Theobroma cacao | Chromosome_6 | 6 | CH_tca_224 | 6 | 43 | 0.00000000228563 |
| Theobroma cacao | Chromosome_2 | 6 | CH_tca_272 | 4 | 6 | 0.0000000321525 |
| Tarenaya hassleriana | NW_010962392.1 | 6 | CH_tha_118 | 3 | 4 | 0.000000292701 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_304 | 3 | 4 | 0.0000029008 |
| Vitis vinifera | chr9 | 6 | CH_vvi_474 | 3 | 5 | 0.000048561 |
| Vitis vinifera | chr19 | 6 | CH_vvi_658 | 3 | 9 | 0.000407245 |
| Zea mays | 7 | 6 | CH_zma_97 | 8 | 80 | 0.000000000608066 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |