Functional clusters

Information

  • Type InterPro
  • Description LURP-one-related

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_368 5 CH_aag_138 3 14 0.00000351546
Aethionema arabicum LG-1 5 CH_aar_208 3 3 0.00000454477
Acer truncatum chr9 5 CH_acertr_186 4 5 0.00000000717186
Actinidia chinensis Lachesis_group8 5 CH_ach_300 4 29 0.000119978
Actinidia chinensis Lachesis_group0 5 CH_ach_409 4 32 0.000181401
Aquilegia oxysepala CHR04 5 CH_aox_94 4 4 0.00000000211257
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.04 5 CH_arhy_178 7 14 0.00000000000000361767
Arabidopsis thaliana Chr1 5 CH_ath_190 4 9 0.0000000430241
Brassica carinata ChrB06 5 CH_bca_1391 3 4 0.0000986283
Brassica napus A06 5 CH_bna_835 3 3 0.0000143259
Brassica napus C06 5 CH_bna_836 3 3 0.0000143259
Brassica oleracea C6 5 CH_bol_418 3 3 0.0000072037
Brassica rapa A06 5 CH_bra_278 3 3 0.00000905719
Camellia sinensis var. sinensis Chr4 5 CH_camsi_718 3 3 0.00000305628
Camellia sinensis var. sinensis Chr12 5 CH_camsi_839 4 26 0.0000166525
Cannabis sativa NC_044374.1 5 CH_cansat_486 3 10 0.000281917
Cicer arietinum L. Ca_LG3_v3 5 CH_car_183 3 7 0.0000524182
Citrus clementina scaffold_3 5 CH_ccl_444 3 3 0.0000178766
Citrus clementina scaffold_6 5 CH_ccl_76 7 7 5.88617e-18
Citrus clementina scaffold_6 5 CH_ccl_794 3 8 0.000997808
Ceratophyllum demersum 5 5 CH_cde_106 4 12 0.000000521799
Ceratophyllum demersum 4 5 CH_cde_77 5 33 0.000000088406
Carpinus fangiana Cfa07 5 CH_cfa_194 4 6 0.0000000266659
Carya illinoinensis Chr10 5 CH_cil_60 8 11 5.8381e-20
Daucus carota DCARv2_Chr2 5 CH_dca_309 3 3 0.00000497887
Daucus carota DCARv2_Chr8 5 CH_dca_81 5 6 0.00000000000637797
Durio zibethinus NW_019168270.1 5 CH_dzi_364 3 4 0.0000376855
Erythranthe guttata scaffold_10 5 CH_egut_197 4 4 0.00000000158109
Eutrema salsugineum scaffold_1 5 CH_esa_258 3 3 0.00000842888
Fragaria vesca Fvb6 5 CH_fve_99 5 5 0.000000000000180869
Gossypium hirsutum D08 5 CH_ghi_570 4 8 0.000000845415
Glycine max Gm18 5 CH_gma_503 3 3 0.0000129314
Glycine max Gm16 5 CH_gma_669 3 5 0.000129195
Gossypium raimondii Chr04 5 CH_gra_280 4 8 0.000000408573
Helianthus annuus HanXRQChr13 5 CH_han_210 8 45 0.0000000000075325
Helianthus annuus HanXRQChr15 5 CH_han_420 4 4 0.0000000506947
Helianthus annuus HanXRQChr11 5 CH_han_531 4 6 0.000000759239
Lonicera japonica GWHAAZE00000002 5 CH_lonja_354 4 5 0.00000000586233
Lonicera japonica GWHAAZE00000002 5 CH_lonja_583 3 3 0.00000301275
Lactuca sativa Lsat_1_v8_lg_8 5 CH_lsa_112 9 72 0.0000000000000736913
Lactuca sativa Lsat_1_v8_lg_5 5 CH_lsa_837 3 7 0.000561934
Magnolia biondii Chr15 5 CH_mbi_242 5 11 0.000000000506589
Magnolia biondii Chr03 5 CH_mbi_299 5 17 0.00000000677024
Malus domestica Chr12 5 CH_mdo_1046 3 6 0.000157454
Malus domestica Chr04 5 CH_mdo_1047 3 6 0.000157454
Malus domestica Chr06 5 CH_mdo_384 4 5 0.0000000194209
Malus domestica Chr14 5 CH_mdo_805 4 22 0.0000282211
Manihot esculenta Chromosome09 5 CH_mes_425 3 3 0.00000743899
Marchantia polymorpha scaffold_31 5 CH_mpo_30 7 21 0.00000000000191417
Medicago truncatula chr8 5 CH_mtr_238 5 5 0.000000000000562886
Medicago truncatula chr7 5 CH_mtr_299 5 8 0.0000000000314922
Medicago truncatula chr1 5 CH_mtr_771 3 3 0.00000389956
Nelumbo nucifera chr2 5 CH_nnu_528 3 10 0.000340095
Nicotiana tabacum Nitab4.5_0001356 5 CH_nta_134 3 3 0.00000397345
Petunia axillaris Peaxi162Scf00744 5 CH_pax_175 4 5 0.000000055481
Petunia axillaris Peaxi162Scf00102 5 CH_pax_384 3 4 0.0000600785
Physcomitrium patens Chr12 5 CH_ppa_409 2 2 0.000919089
Prunus persica Pp05 5 CH_ppe_163 5 5 0.00000000000360139
Prunus persica Pp06 5 CH_ppe_183 5 6 0.0000000000215975
Pisum sativum chr7LG7 5 CH_psa_29 8 18 1.82019e-18
Papaver somniferum NC_039366.1 5 CH_pso_125 7 13 0.00000000000000204076
Papaver somniferum NC_039368.1 5 CH_pso_135 7 15 0.00000000000000764603
Papaver somniferum NC_039362.1 5 CH_pso_18 13 36 2.8363e-29
Papaver somniferum NC_039360.1 5 CH_pso_375 5 14 0.00000000905134
Papaver somniferum NW_020631041.1 5 CH_pso_866 3 4 0.0000633955
Papaver somniferum NW_020618825.1 5 CH_pso_867 3 4 0.0000633955
Populus trichocarpa Chr16 5 CH_ptr_20 12 13 6.33313e-33
Quercus lobata 12 5 CH_qlo_1053 3 3 0.00000531789
Quercus lobata 7 5 CH_qlo_1359 4 34 0.000113313
Quercus lobata 7 5 CH_qlo_604 4 4 0.00000000247114
Rosa chinensis RcHm_v2.0_Chr7 5 CH_rch_819 3 4 0.0000053388
Rhododendron simsii chr05 5 CH_rsi_274 4 4 0.000000000399087
Salvia bowleyana GWHASIU00000003 5 CH_sbo_270 4 7 0.0000000382995
Salix brachista GWHAAZH00000004 5 CH_sbr_126 5 6 0.0000000000238668
Sequoiadendron giganteum chr1 5 CH_sgi_1117 4 5 0.000000193968
Sequoiadendron giganteum chr1 5 CH_sgi_1118 4 5 0.000000193968
Sequoiadendron giganteum chr1 5 CH_sgi_179 10 19 1.48011e-21
Sequoiadendron giganteum chr3 5 CH_sgi_2155 4 19 0.000148762
Sequoiadendron giganteum chr11 5 CH_sgi_380 6 6 0.0000000000000323906
Sequoiadendron giganteum chr2 5 CH_sgi_608 5 5 0.0000000000359369
Sequoiadendron giganteum chr2 5 CH_sgi_670 5 6 0.000000000215454
Sapria himalayana scaffold65_2763911 5 CH_shi_425 2 2 0.000171541
Solanum lycopersicum SL4.0ch09 5 CH_sly_169 5 9 0.0000000000959756
Solanum lycopersicum SL4.0ch08 5 CH_sly_445 3 3 0.00000421679
Selaginella moellendorffii scaffold_12 5 CH_smo_24 5 7 0.000000000000251394
Solanum pennellii Spenn-ch08 5 CH_spe_363 3 3 0.00000135028
Solanum pennellii Spenn-ch09 5 CH_spe_827 3 15 0.000612739
Solanum tuberosum ST4.03ch08 5 CH_stu_450 3 3 0.0000032144
Solanum tuberosum ST4.03ch09 5 CH_stu_949 3 13 0.000916437
Trochodendron aralioides group7 5 CH_tar_143 5 14 0.000000000849881
Theobroma cacao Chromosome_4 5 CH_tca_227 4 4 0.00000000280522
Theobroma cacao Chromosome_10 5 CH_tca_721 3 10 0.000654632
Trifolium pratense Tp57577_TGAC_v2_LG3 5 CH_tpr_263 3 3 0.00000103146
Vigna mungo CM024070.1 5 CH_vmu_47 6 11 0.000000000000317125
Vanilla planifolia CM028152.1 5 CH_vpl_310 4 20 0.0000225543
Vanilla planifolia CM028161.1 5 CH_vpl_650 4 41 0.000466695
Zea mays 4 5 CH_zma_283 3 3 0.0000143299
Zea mays 8 5 CH_zma_284 3 3 0.0000143299
Anthoceros agrestis Sc2ySwM_368 6 CH_aag_138 3 14 0.00000351546
Aethionema arabicum LG-1 6 CH_aar_208 3 3 0.00000454477
Acer truncatum chr9 6 CH_acertr_186 4 5 0.00000000717186
Actinidia chinensis Lachesis_group8 6 CH_ach_300 4 29 0.000119978
Actinidia chinensis Lachesis_group0 6 CH_ach_409 4 32 0.000181401
Aquilegia oxysepala CHR04 6 CH_aox_94 4 4 0.00000000211257
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.04 6 CH_arhy_178 7 14 0.00000000000000361767
Arabidopsis thaliana Chr1 6 CH_ath_190 4 9 0.0000000430241
Brassica carinata ChrB06 6 CH_bca_1391 3 4 0.0000986283
Brassica napus A06 6 CH_bna_835 3 3 0.0000143259
Brassica napus C06 6 CH_bna_836 3 3 0.0000143259
Brassica oleracea C6 6 CH_bol_418 3 3 0.0000072037
Brassica rapa A06 6 CH_bra_278 3 3 0.00000905719
Camellia sinensis var. sinensis Chr4 6 CH_camsi_718 3 3 0.00000305628
Camellia sinensis var. sinensis Chr12 6 CH_camsi_839 4 26 0.0000166525
Cannabis sativa NC_044374.1 6 CH_cansat_486 3 10 0.000281917
Cicer arietinum L. Ca_LG3_v3 6 CH_car_183 3 7 0.0000524182
Citrus clementina scaffold_3 6 CH_ccl_444 3 3 0.0000178766
Citrus clementina scaffold_6 6 CH_ccl_76 7 7 5.88617e-18
Citrus clementina scaffold_6 6 CH_ccl_794 3 8 0.000997808
Ceratophyllum demersum 5 6 CH_cde_106 4 12 0.000000521799
Ceratophyllum demersum 4 6 CH_cde_77 5 33 0.000000088406
Carpinus fangiana Cfa07 6 CH_cfa_194 4 6 0.0000000266659
Carya illinoinensis Chr10 6 CH_cil_60 8 11 5.8381e-20
Daucus carota DCARv2_Chr2 6 CH_dca_309 3 3 0.00000497887
Daucus carota DCARv2_Chr8 6 CH_dca_81 5 6 0.00000000000637797
Durio zibethinus NW_019168270.1 6 CH_dzi_364 3 4 0.0000376855
Erythranthe guttata scaffold_10 6 CH_egut_197 4 4 0.00000000158109
Eutrema salsugineum scaffold_1 6 CH_esa_258 3 3 0.00000842888
Fragaria x ananassa Fvb6-1 6 CH_fan_228 4 4 0.0000000033901
Fragaria x ananassa Fvb6-4 6 CH_fan_610 3 3 0.0000083277
Fragaria vesca Fvb6 6 CH_fve_99 5 5 0.000000000000180869
Gossypium hirsutum D08 6 CH_ghi_570 4 8 0.000000845415
Glycine max Gm18 6 CH_gma_503 3 3 0.0000129314
Glycine max Gm16 6 CH_gma_669 3 5 0.000129195
Gossypium raimondii Chr04 6 CH_gra_280 4 8 0.000000408573
Helianthus annuus HanXRQChr13 6 CH_han_210 8 45 0.0000000000075325
Helianthus annuus HanXRQChr15 6 CH_han_420 4 4 0.0000000506947
Helianthus annuus HanXRQChr11 6 CH_han_531 4 6 0.000000759239
Lonicera japonica GWHAAZE00000002 6 CH_lonja_354 4 5 0.00000000586233
Lonicera japonica GWHAAZE00000002 6 CH_lonja_583 3 3 0.00000301275
Lactuca sativa Lsat_1_v8_lg_8 6 CH_lsa_112 9 72 0.0000000000000736913
Lactuca sativa Lsat_1_v8_lg_5 6 CH_lsa_837 3 7 0.000561934
Magnolia biondii Chr15 6 CH_mbi_242 5 11 0.000000000506589
Magnolia biondii Chr03 6 CH_mbi_299 5 17 0.00000000677024
Malus domestica Chr12 6 CH_mdo_1046 3 6 0.000157454
Malus domestica Chr04 6 CH_mdo_1047 3 6 0.000157454
Malus domestica Chr06 6 CH_mdo_384 4 5 0.0000000194209
Malus domestica Chr14 6 CH_mdo_805 4 22 0.0000282211
Manihot esculenta Chromosome09 6 CH_mes_425 3 3 0.00000743899
Marchantia polymorpha scaffold_31 6 CH_mpo_30 7 21 0.00000000000191417
Medicago truncatula chr8 6 CH_mtr_238 5 5 0.000000000000562886
Medicago truncatula chr7 6 CH_mtr_299 5 8 0.0000000000314922
Medicago truncatula chr1 6 CH_mtr_771 3 3 0.00000389956
Nelumbo nucifera chr2 6 CH_nnu_528 3 10 0.000340095
Nicotiana tabacum Nitab4.5_0001356 6 CH_nta_134 3 3 0.00000397345
Petunia axillaris Peaxi162Scf00744 6 CH_pax_175 4 5 0.000000055481
Petunia axillaris Peaxi162Scf00102 6 CH_pax_384 3 4 0.0000600785
Physcomitrium patens Chr12 6 CH_ppa_409 2 2 0.000919089
Prunus persica Pp05 6 CH_ppe_163 5 5 0.00000000000360139
Prunus persica Pp06 6 CH_ppe_183 5 6 0.0000000000215975
Pisum sativum chr7LG7 6 CH_psa_29 8 18 1.82019e-18
Papaver somniferum NC_039366.1 6 CH_pso_125 7 13 0.00000000000000204076
Papaver somniferum NC_039368.1 6 CH_pso_135 7 15 0.00000000000000764603
Papaver somniferum NC_039362.1 6 CH_pso_18 13 36 2.8363e-29
Papaver somniferum NC_039360.1 6 CH_pso_375 5 14 0.00000000905134
Papaver somniferum NW_020631041.1 6 CH_pso_866 3 4 0.0000633955
Papaver somniferum NW_020618825.1 6 CH_pso_867 3 4 0.0000633955
Populus trichocarpa Chr16 6 CH_ptr_20 12 13 6.33313e-33
Quercus lobata 12 6 CH_qlo_1053 3 3 0.00000531789
Quercus lobata 7 6 CH_qlo_1359 4 34 0.000113313
Quercus lobata 7 6 CH_qlo_604 4 4 0.00000000247114
Rosa chinensis RcHm_v2.0_Chr7 6 CH_rch_819 3 4 0.0000053388
Rhododendron simsii chr05 6 CH_rsi_274 4 4 0.000000000399087
Salvia bowleyana GWHASIU00000003 6 CH_sbo_270 4 7 0.0000000382995
Salix brachista GWHAAZH00000004 6 CH_sbr_126 5 6 0.0000000000238668
Sequoiadendron giganteum chr1 6 CH_sgi_1117 4 5 0.000000193968
Sequoiadendron giganteum chr1 6 CH_sgi_1118 4 5 0.000000193968
Sequoiadendron giganteum chr1 6 CH_sgi_179 10 19 1.48011e-21
Sequoiadendron giganteum chr3 6 CH_sgi_2155 4 19 0.000148762
Sequoiadendron giganteum chr11 6 CH_sgi_380 6 6 0.0000000000000323906
Sequoiadendron giganteum chr2 6 CH_sgi_608 5 5 0.0000000000359369
Sequoiadendron giganteum chr2 6 CH_sgi_670 5 6 0.000000000215454
Sapria himalayana scaffold65_2763911 6 CH_shi_425 2 2 0.000171541
Solanum lycopersicum SL4.0ch09 6 CH_sly_169 5 9 0.0000000000959756
Solanum lycopersicum SL4.0ch08 6 CH_sly_445 3 3 0.00000421679
Selaginella moellendorffii scaffold_12 6 CH_smo_24 5 7 0.000000000000251394
Solanum pennellii Spenn-ch08 6 CH_spe_363 3 3 0.00000135028
Solanum pennellii Spenn-ch09 6 CH_spe_827 3 15 0.000612739
Solanum tuberosum ST4.03ch08 6 CH_stu_450 3 3 0.0000032144
Solanum tuberosum ST4.03ch09 6 CH_stu_949 3 13 0.000916437
Trochodendron aralioides group7 6 CH_tar_143 5 14 0.000000000849881
Theobroma cacao Chromosome_4 6 CH_tca_227 4 4 0.00000000280522
Theobroma cacao Chromosome_10 6 CH_tca_721 3 10 0.000654632
Trifolium pratense Tp57577_TGAC_v2_LG3 6 CH_tpr_263 3 3 0.00000103146
Vigna mungo CM024070.1 6 CH_vmu_47 6 11 0.000000000000317125
Vanilla planifolia CM028152.1 6 CH_vpl_310 4 20 0.0000225543
Vanilla planifolia CM028161.1 6 CH_vpl_650 4 41 0.000466695
Zea mays 4 6 CH_zma_283 3 3 0.0000143299
Zea mays 8 6 CH_zma_284 3 3 0.0000143299

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001